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Mouse Genome Issue MG-104

Summary:
GeneID: 666468 (Atg4a), missed join
Description:
Alignment of RefSeq NM_174875.3 (representing Atg4a, GeneID:666468) to the reference genome suggests the gap between components CR478060.2 and CT025930.4 might be closed.
Status:
Resolved (GRC Resolved by Electronic Means)
Type:
Gap
Last updated:
2017-10-12
Experiment type:
Clone Sequencing
Affects version:
MGSCv36
Fix version:
GRCm39, GRCm38.p6
Resolution:
Component MF597730.1 has been added and closes the gap in the TPF between components FQ976858.2 and FO082333.3.

Patches and alternate loci

Scaffold type:
FIX patch to GRCm38
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This scaffold adds components MF597730.1 and FO082333.3 to the reference assembly closing a gap between GRCm38 chromosome X (NC_000086.7) components FQ976858.2 and CR478060.2. This update also improves representation of Atg4a (NM_174875.3).
Revision history of patches and alts for MG-104
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCm38 FIX MG104_PATCH KZ289092.1 Atg4a
GRCm38.p6 FIX MG104_PATCH KZ289092.1 NW_019168531.1 Atg4a

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.
  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)