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Human Genome Region 10Q11

Assembly:
GRCh37.p13
Location:
chr10:46,224,334-51,886,485
Cytogenetic location:

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Genome issues
Issue ID Status Description Resolution text
HG-1074 Resolved A gap exists between components AL731572.9 and AL442003.8 The gap in the chromosome between components AL731572.9 and AL442003.8 has been closed by the addition of sequenced components FP565721.2 and FO393433.2
HG-1211 Resolved There may be an inversion within AL732434.20. Inversion in the component caused by assembly error between two tandem repeats has been corrected. Updated version AL732434.21 contains the corrected assembly. The new assembly is consistent with optical map information from cell lines GM10890, GM15510 and GM18994.
HG-1271 Resolved TPF updates since GRCh37 suggest a possible path problem in this region of NC_000010.10 The tiling path in the GRCh37 NC_000010.10 region between components AC012044.15 to AL603966.9 region was inconsistent with optical map data. This issue was resolved via a substantial re-ordering and change of components so that the region now concurs with the optical map. The updated path can be viewed at: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/overlap/tpfview.cgi?taxid=9606&page=tpf&assembly=reference&chr=10. For a more detailed description of the changes that were made, please contact the GRC, referencing issue HG-1271: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/contact.shtml.
Patches and alternate loci
Show in Viewer GenBank ID RefSeq ID Scaffold type Length Alignment mismatch Unique sequence
JH591181.2 NW_003871068.1 FIX 2,281,126 1,085 129,259
KB663606.1 NW_004504302.1 FIX 305,900 22 30,551
           

10Q11 -- chr10 (NC_000010.10):46,224,334-51,886,485