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Human Genome Issue HG-27

Summary:
Hsa6- SMA3 problem region
Description:
ESP analysis suggests the reference chromosome contains an inversion within AL591044.11
Status:
Resolved (GRC Resolved by Electronic Means)
Type:
Clone Problem
Last updated:
2015-07-23
Experiment type:
Clone Sequencing
Affects version:
NCBI36
Fix version:
GRCh37.p10, GRCh38
Resolution:
An assembly problem has been corrected in AL591044.12. The updated assembly corrects an inversion occuring in the submission and adds an additional 32.5kb of sequence previously missing from the assembly. This assembly is consistent with optical map information from GM15510 cell line.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. GRCh37 NC_000006.11 component AL591044.11 was incorrectly assembled; this is corrected in the updated version AL591044.12 used in this patch.
Revision history of patches and alts for HG-27
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p10 FIX HG27_PATCH JH806576.1 NW_004070866.1 REGION80

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.
  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)