Skip navigation and go to main content

Human Genome Issue HG-1355

Summary:
Chr. 5 CHORI-17 Pathway: OCLN (Gene ID: 100506658)
Description:
Clones have been selected for sequencing that align near the AC139277.2 - AC138832.2 region of Chr. 5. These may be used to improve the reference or to represent an alternate haplotype.
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Unknown
Last updated:
2020-03-24
Experiment type:
Clone Sequencing
Affects version:
GRCh37
Fix version:
GRCh38
Resolution:
This CH17 pathway has been added to the Chrom. 5 ALT_REF_LOCI_2 TPF as an alternate, single haplotype of the SMA locus.

Patches and alternate loci

Scaffold type:
ALT in GRCh38
Comment:
This CHORI-17 pathway represents an alternate haplotype of the SMA locus on Chromosome 5, GRCh38.
Revision history of patches and alts for HG-1355
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh38 ALT HSCHR5_1_CTG1_1 KI270897.1 NT_187651.1 SMA

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.
  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)