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Human Genome Issue HG-1007

Summary:
Incorrect orientation for AC215220.2
Description:
AC215220.2 is in the wrong orientation (+) in GRCh37. It should be changed to (-).
Status:
Resolved (GRC Resolved by Electronic Means)
Type:
Path Problem
Last updated:
2015-07-23
Affects version:
GRCh37
Fix version:
GRCh37.p4, GRCh37.p5, GRCh38
Resolution:
The (-) orientation of AC215220.2 within this scaffold corrects it's orientation in GRCh37 chromosome NC_000002.11

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. Deleted cosmid XXcos-2003C17 (AC130223.2), a component of NC_000002.11 was removed, and an end-to-end overlap between AC134873.2 and AC215220.2 was identified. The (-) orientation of AC215220.2 within this scaffold corrects its orientation in GRCh37 chromosome NC_000002.11.
Revision history of patches and alts for HG-1007
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p4 FIX HG1007_PATCH GL877870.1 NW_003571031.1 REGION54
GRCh37.p5 FIX HG1007_PATCH GL877870.2 NW_003571031.1 REGION54

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)