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Human Genome Issue HG-1000

Summary:
FIX patch for Chr.20 Gap Problem (left side)
Description:
There is an assembly gap between between accessions BX640513.2 and AL450469.11. A gap extension from the left hand side is being considered for a patch release.
Status:
Resolved (GRC-Duplicate)
Type:
Gap
Last updated:
2015-07-23
Fix version:
GRCh37.p3, GRCh37.p9
Resolution:
An extension from the left side of this gap was released as a FIX patch: GL582979.1. This patch provides additional sequence for the gap located between components BX640513.2 and AL450469.11 in reference chromosome NC_000020.10. There is another ticket describing a FIX patch that extends into this gap from the right side in HG-1411.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This patch closes the gap located between components AL499627.23 and AL449263.6, and provides additional sequence for the gap located between components BX640513.2 and AL450469.11 in reference chromosome NC_000020.10.
Revision history of patches and alts for HG-1000
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p3 FIX HG506_HG1000_1_PATCH GL582979.1 NW_003571063.1 REGION53
GRCh37.p9 FIX HG506_HG507_HG1000_PATCH GL582979.2 NW_003571063.2 REGION53

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)