Human Genome Assembly GRCh38.p13
Information on tiling path files (TPFs) for the
assembly is available at
TPF Overview .
Other assembly versions:
Select one
GRCh38.p14
GRCh38.p12
GRCh38.p11
GRCh38.p10
GRCh38.p9
GRCh38.p8
GRCh38.p7
GRCh38.p6
GRCh38.p5
GRCh38.p4
GRCh38.p3
GRCh38.p2
GRCh38.p1
GRCh38
GRCh37.p13
GRCh37.p12
GRCh37.p11
GRCh37.p10
GRCh37.p9
GRCh37.p8
GRCh37.p7
GRCh37.p6
GRCh37.p5
GRCh37.p4
GRCh37.p3
GRCh37.p2
GRCh37.p1
GRCh37
NCBI36
NA19240_prelim_3.0
CHM1_1.1
Chromosome lengths are calculated by summing the length of the placed scaffolds and estimated gaps.
Chromosome
Total length (bp)
GenBank accession
RefSeq accession
1
248,956,422
CM000663.2
NC_000001.11
2
242,193,529
CM000664.2
NC_000002.12
3
198,295,559
CM000665.2
NC_000003.12
4
190,214,555
CM000666.2
NC_000004.12
5
181,538,259
CM000667.2
NC_000005.10
6
170,805,979
CM000668.2
NC_000006.12
7
159,345,973
CM000669.2
NC_000007.14
8
145,138,636
CM000670.2
NC_000008.11
9
138,394,717
CM000671.2
NC_000009.12
10
133,797,422
CM000672.2
NC_000010.11
11
135,086,622
CM000673.2
NC_000011.10
12
133,275,309
CM000674.2
NC_000012.12
13
114,364,328
CM000675.2
NC_000013.11
14
107,043,718
CM000676.2
NC_000014.9
15
101,991,189
CM000677.2
NC_000015.10
16
90,338,345
CM000678.2
NC_000016.10
17
83,257,441
CM000679.2
NC_000017.11
18
80,373,285
CM000680.2
NC_000018.10
19
58,617,616
CM000681.2
NC_000019.10
20
64,444,167
CM000682.2
NC_000020.11
21
46,709,983
CM000683.2
NC_000021.9
22
50,818,468
CM000684.2
NC_000022.11
X
156,040,895
CM000685.2
NC_000023.11
Y
57,227,415
CM000686.2
NC_000024.10
Total lengths are calculated by summing the length of the sequenced bases and estimated gaps.
Chromosome
All scaffolds
Placed scaffolds
Unplaced scaffolds
1
249,698,942
248,956,422
742,520
2
242,508,799
242,193,529
315,270
3
198,450,956
198,295,559
155,397
4
190,424,264
190,214,555
209,709
5
181,630,948
181,538,259
92,689
6
170,805,979
170,805,979
0
7
159,345,973
159,345,973
0
8
145,138,636
145,138,636
0
9
138,688,728
138,394,717
294,011
10
133,797,422
133,797,422
0
11
135,186,938
135,086,622
100,316
12
133,275,309
133,275,309
0
13
114,364,328
114,364,328
0
14
108,136,338
107,043,718
1,092,620
15
102,439,437
101,991,189
448,248
16
92,211,104
90,338,345
1,872,759
17
83,836,422
83,257,441
578,981
18
80,373,285
80,373,285
0
19
58,617,616
58,617,616
0
20
64,444,167
64,444,167
0
21
46,709,983
46,709,983
0
22
51,857,516
50,818,468
1,039,048
X
156,040,895
156,040,895
0
Y
57,264,655
57,227,415
37,240
Un
4,485,509
na
4,485,509
Genome
3,099,734,149
3,088,269,832
11,464,317
Region
Location
Sequence types
Scaffold length
1Q21
chr1:144488706-144674781
ALT
185,285
ABO
chr9:133174055-133504070
FIX
330,164
ABR
chr17:960754-1449331
ALT
548,456
ADAM5
chr8:39094318-39873856
ALT
624,492
APOBEC
chr22:38884294-39011160
ALT
96,924
APOL5
chr22:35685234-35942668
ALT
263,666
B3GNTL1
chr17:82922720-83103577
ALT
178,921
BAGE5
chr13:18171249-18358106
FIX
356,766
C1R
chr12:7071546-7264845
FIX
192,531
CASP8AP2
chr6:89804656-89941739
FIX
139,427
CCL5_TBC1D3
chr17:35765469-38841755
ALT
3,202,874
CEACAM_REGION_1
chr19:41456581-41682000
ALT
233,762
CT47_REGION
chrX:120599933-121083725
FIX
403,128
CTIF
chr18:48514982-48918117
FIX
407,387
CTRB1_CTRB2
chr16:75169811-75248387
NOVEL
78,609
CYP2D6
chr22:42077656-42253758
ALT, NOVEL
1,198,357
DEFENSIN_REGION_1
chr8:6604731-13171905
ALT, FIX
6,667,758
DOC2B_RPH3AL
chr17:60001-402637
ALT
513,412
ECSCR
chr5:139409472-139500161
FIX
89,956
ELANE
chr19:821158-881412
ALT
61,734
FCGBP
chr19:39740125-40095774
FIX
370,917
FOXO6
chr1:41250328-41436604
FIX
186,494
FRA16A
chr16:16998740-17478916
FIX
480,415
GALNT9
chr12:132092972-132391208
FIX
297,568
GCNT2
chr6:10489117-10731912
FIX
242,796
GPI
chr19:34350807-34392977
ALT
43,156
GUSBP1
chr5:21448370-21713081
NOVEL
362,221
IGH
chr14:92885439-94394539
ALT
1,511,111
IGK
chr2:88891175-89330679
FIX
481,245
IGL
chr22:22373449-22624257
ALT
259,914
KRTAP_REGION_1
chr17:40850733-41432935
ALT
569,697
KRTAP_REGION_2
chr11:1523474-1740879
ALT
391,717
LPPR1
chr9:100948798-101378291
ALT
439,082
LRC_KIR
chr19:54025634-55084318
ALT, NOVEL
16,258,256
MAMDC2
chr9:70024113-70189318
ALT
171,286
MAPT
chr17:45309498-46903773
ALT
3,245,182
MCTP1
chr5:95169857-95254491
ALT
101,241
MEGF11
chr15:65908183-66284818
ALT
388,773
MHC
chr6:28510120-33480577
ALT
33,190,315
MTX1
chr1:155210382-155305245
ALT
110,268
MUCIN_REGION_1
chr11:937258-1207515
ALT, FIX
522,263
MUCIN_REGION_2
chr3:195629504-195827492
ALT
1,225,334
NOR_CHR_13
chr13:15590088-16000000
FIX
409,912
NOR_CHR_14
chr14:15600817-16000000
FIX
399,183
NOR_CHR_15
chr15:16603485-17000000
FIX
396,515
NOR_CHR_21
chr21:8310972-8472360
FIX
519,485
NOR_CHR_22
chr22:10097632-10510000
FIX
412,368
OLFACTORY_REGION_1
chr11:56189252-56873567
ALT
392,407
OLFACTORY_REGION_2
chr11:7779133-7972558
ALT, NOVEL
407,611
OLFACTORY_REGION_3
chr1:248352027-248511794
ALT
328,046
OLFACTORY_REGION_4
chr11:49958373-50099251
FIX
140,877
OVOS2
chr12:31111480-31347345
ALT
238,139
PAM16
chr16:4299637-4530534
ALT
232,857
POLR2A
chr17:7379544-7534268
FIX
154,723
PPFIA1
chr11:70244180-70455787
FIX
217,075
PRADER_WILLI
chr15:19775255-24552710
ALT, FIX
6,766,268
PRAME_REGION_1
chr1:12818488-13312803
ALT, FIX, NOVEL
1,002,073
PRH1_PRR4
chr12:10801295-11377386
ALT
1,020,710
PTEN
chr10:87784179-88048756
FIX
264,545
RAB11FIP3
chr16:400855-531525
ALT
134,193
REGION10
chr6:79350008-79446911
ALT
124,736
REGION104
chr11:470360-678681
ALT
210,133
REGION105
chr11:2767814-3065846
ALT
296,895
REGION106
chr11:69165291-69229344
ALT
67,707
REGION107
chr11:134773600-134962792
ALT
186,169
REGION108
chr1:2448811-2791270
ALT
354,444
REGION109
chr1:30352191-30456601
ALT
109,528
REGION11
chr7:141633409-141746583
ALT
119,183
REGION110
chr1:234163457-234211370
ALT
50,258
REGION111
chr1:242987893-243895211
ALT
911,658
REGION112
chr1:245305697-245727576
ALT
425,601
REGION113
chr2:728878-860300
ALT
136,240
REGION114
chr2:1204935-1273724
ALT
70,887
REGION115
chr2:1315177-1541254
ALT
223,625
REGION116
chr2:90218337-90402511
ALT
347,199
REGION117
chr2:115908855-116040717
ALT
138,019
REGION118
chr2:116874515-116981849
ALT
110,395
REGION119
chr2:131697037-131806107
ALT
110,099
REGION120
chr2:241787903-242117508
ALT
496,962
REGION121
chr2:3391898-3511146
ALT
120,616
REGION122
chr3:20277967-20382602
ALT
109,187
REGION123
chr3:125665519-125883802
ALT
224,108
REGION124
chr3:154111571-154282042
ALT
173,649
REGION125
chr3:166300784-166544173
ALT
248,252
REGION126
chr3:184425340-184533338
ALT
113,034
REGION127
chr3:197397856-197558882
ALT
162,429
REGION128
chr3:198047549-198235559
ALT
184,404
REGION129
chr4:21521367-21734410
ALT
220,246
REGION13
chr9:69413743-69477097
ALT
71,551
REGION130
chr4:55678095-55785754
ALT
111,943
REGION131
chr4:120164199-120317014
ALT
158,965
REGION132
chr4:186920392-187048061
ALT
119,912
REGION133
chr4:188341423-188542359
ALT
205,944
REGION134
chr4:189361858-190204555
ALT, FIX, NOVEL
1,614,283
REGION135
chr5:502435-626896
ALT
126,136
REGION136
chr5:33800665-33963236
ALT
164,558
REGION137
chr5:125279466-125444151
ALT
172,708
REGION138
chr5:177865465-177996111
ALT
262,849
REGION139
chr6:65774814-65944033
ALT
175,808
REGION14
chr9:7428994-7577169
ALT
162,988
REGION140
chr6:68262879-68402208
ALT
152,148
REGION141
chr6:127654803-128521146
ALT
870,480
REGION142
chr6:166220580-166285980
ALT
75,005
REGION143
chr6:169724799-169919706
ALT
197,536
REGION144
chr6:170272763-170535221
ALT
271,782
REGION145
chr7:10001-279542
ALT, FIX
603,580
REGION146
chr7:76500982-76722751
ALT
209,586
REGION147
chr7:103086563-103242097
ALT
158,166
REGION148
chr7:148214874-148487860
ALT
271,455
REGION149
chr7:157697532-157820586
ALT
126,434
REGION15
chr9:88179047-88227980
ALT
60,032
REGION150
chr7:158267495-158477174
ALT
209,988
REGION151
chr8:718410-2817440
ALT
2,391,212
REGION152
chr8:57173351-57303398
ALT
141,812
REGION153
chr8:128554723-128925740
ALT
374,415
REGION154
chr8:141333447-141461079
ALT
133,535
REGION155
chr8:141766834-141800272
ALT
36,640
REGION156
chr8:143009713-143163398
ALT
158,983
REGION157
chr8:143509961-143828794
ALT
305,841
REGION158
chr8:144628750-144757761
ALT
132,244
REGION159
chr10:42103240-42298939
ALT
181,496
REGION16
chr10:27285655-27417608
ALT
179,254
REGION160
chr10:77761309-77931226
ALT
188,315
REGION161
chr12:123826509-123945954
ALT
119,498
REGION162
chr12:130323076-130394967
ALT
76,061
REGION163
chr12:131543020-131584984
ALT
56,134
REGION164
chr13:18698351-18884136
ALT
191,684
REGION165
chr13:25652362-25828680
ALT
180,306
REGION166
chr13:70341886-70442876
ALT
103,832
REGION167
chr13:89598964-89764093
ALT
169,134
REGION168
chr13:112182875-112505943
ALT
306,913
REGION169
chr13:113649178-113763795
ALT, FIX
102,681
REGION170
chr14:91535865-91854371
ALT
322,166
REGION171
chr14:105533003-106860219
ALT
1,351,393
REGION172
chr15:82289984-82641774
ALT
430,880
REGION173
chr16:1871895-1933852
ALT
63,982
REGION174
chr16:14427144-16998739
ALT
2,659,700
REGION175
chr17:71584518-71819311
ALT
235,827
REGION176
chr17:72833331-72935743
ALT, NOVEL
225,516
REGION177
chr18:43667277-43773892
ALT
111,737
REGION178
chr18:79563122-79725366
ALT
167,999
REGION179
chr20:61886306-62008187
ALT
118,774
REGION18
chr10:45175233-45468971
ALT
309,802
REGION180
chr20:64095055-64274842
ALT
183,433
REGION181
chr20:63414721-63471095
ALT
58,661
REGION182
chr21:17146893-17310433
ALT
166,743
REGION183
chr21:17603695-17744061
ALT
143,900
REGION184
chr22:23354043-23516062
ALT
186,262
REGION185
chr22:23763639-24013509
ALT
304,135
REGION186
chr22:36779214-36877704
ALT
101,331
REGION187
chrX:319338-601516
ALT
558,878
REGION188
chrX:79965154-80097082
ALT
144,206
REGION189
chr1:26512383-26678582
FIX
166,200
REGION19
chr11:25170407-25319080
ALT
154,407
REGION190
chr1:112909422-113029606
FIX
122,022
REGION191
chr3:91247723-91553319
FIX
305,979
REGION192
chr3:44474647-44925818
FIX
451,168
REGION193
chr5:21098347-21230960
NOVEL
139,087
REGION194
chr6:67533466-67796090
FIX
268,330
REGION195
chr10:74797382-75073121
FIX
277,797
REGION196
chr12:17717409-17928910
FIX
211,377
REGION197
chr13:86200738-86292877
FIX
42,764
REGION198
chrY:56821510-56887902
FIX
101,150
REGION199
chr1:210220259-210677001
FIX
460,100
REGION2
chr1:153700531-153865738
ALT
182,439
REGION20
chr12:126227198-126405474
ALT
184,319
REGION200
chr1:17157487-17460319
FIX
305,542
REGION201
chr2:233054663-233420161
FIX
365,499
REGION202
chr2:239696904-239905046
FIX
208,149
REGION203
chr10:131588434-131607480
FIX
14,347
REGION204
chr10:124109957-124195365
FIX
85,284
REGION205
chr10:38918270-39338430
FIX
420,164
REGION206
chr12:12031003-12572035
FIX
541,038
REGION207
chr12:122057735-122145576
FIX
86,533
REGION208
chr13:100900735-101049613
FIX
148,762
REGION209
chr13:113936976-114147229
FIX
206,320
REGION21
chr12:27996034-28110778
ALT
120,804
REGION210
chr3:90528825-90699772
FIX
165,718
REGION211
chr6:61123605-61470683
FIX
320,750
REGION212
chr7:154422352-154602937
FIX
179,932
REGION213
chr16:75930096-76091406
NOVEL
169,136
REGION214
chr6:82140389-82375901
FIX
245,716
REGION215
chr11:92232311-92410192
FIX
181,958
REGION216
chr10:65503225-65684914
NOVEL
185,507
REGION217
chr12:1033530-1135924
NOVEL
109,323
REGION218
chr13:84294441-84452423
NOVEL
168,146
REGION219
chr13:108604134-108722945
NOVEL
123,480
REGION22
chr12:57932737-58092755
ALT
169,178
REGION220
chr16:71137292-71399966
NOVEL
267,463
REGION221
chr16:2820536-2873621
NOVEL
59,016
REGION222
chr4:14931450-15019028
NOVEL
90,922
REGION223
chr4:65880454-66040277
NOVEL
163,749
REGION224
chr4:69959865-70191926
NOVEL
236,512
REGION225
chr6:13101650-13179113
NOVEL
82,315
REGION226
chr9:8983671-9142737
NOVEL
163,882
REGION227
chr9:24949709-25079413
NOVEL
134,099
REGION228
chr1:23237486-23579959
NOVEL
349,938
REGION229
chr1:103909381-104045121
NOVEL
141,019
REGION23
chr12:58929265-59060870
ALT
138,655
REGION230
chr18:22388680-22588100
NOVEL
205,101
REGION231
chr19:38590365-38995717
FIX
405,389
REGION232
chr12:86768210-87083988
FIX
315,610
REGION233
chr2:205890983-206421450
NOVEL
535,088
REGION234
chr5:179235294-179907499
FIX
673,059
REGION235
chr3:16687511-17099186
FIX
411,654
REGION236
chr4:154079465-154493046
NOVEL
420,675
REGION237
chr17:52434177-52673566
NOVEL
246,895
REGION238
chr17:18239627-18506313
NOVEL
276,292
REGION239
chrX:4950957-5129468
NOVEL
188,004
REGION24
chr12:101111599-101258295
ALT
152,874
REGION240
chr1:107987825-108539424
NOVEL
551,020
REGION241
chr7:99092372-99228806
FIX
142,129
REGION242
chr7:107154479-107622612
FIX
468,267
REGION243
chr8:21395510-21659610
FIX
265,876
REGION244
chr8:57022151-57173350
FIX
156,998
REGION245
chr16:21176310-22760988
FIX
1,927,115
REGION246
chr1:28206357-28366763
NOVEL
166,136
REGION247
chr1:72287734-72419130
NOVEL
140,355
REGION248
chr2:126189128-126361783
NOVEL
181,658
REGION249
chr2:208007848-208142067
NOVEL
140,361
REGION25
chr15:27865714-32946929
ALT, NOVEL
7,823,305
REGION250
chr3:84799968-84960626
NOVEL
175,849
REGION251
chr5:3768476-3899281
NOVEL
135,987
REGION252
chr7:143380637-144630931
FIX, NOVEL
1,270,318
REGION253
chr12:1657857-2698722
FIX
1,046,838
REGION254
chr12:121594225-121658918
FIX
64,689
REGION255
chr12:86094144-86261655
NOVEL
174,808
REGION256
chr14:23699022-24389954
FIX
690,932
REGION257
chr14:63664049-63829157
NOVEL
171,798
REGION258
chr18:70423088-70510260
FIX
93,070
REGION259
chrY:9034110-9132718
FIX
48,370
REGION26
chr16:55772981-55968548
ALT
192,462
REGION260
chrY:21578942-21828659
FIX
209,722
REGION261
chr1:29545040-29590578
FIX
44,955
REGION262
chr3:94896163-94997637
FIX
105,527
REGION263
chr3:112116711-112302325
NOVEL
195,063
REGION264
chr3:128137812-128433766
NOVEL
302,885
REGION265
chr3:175333210-175524240
NOVEL
197,752
REGION266
chr3:176115490-176274065
NOVEL
164,041
REGION267
chr7:9026358-9192359
NOVEL
172,555
REGION268
chr8:129724678-129818699
NOVEL
103,072
REGION269
chr11:47572175-47847277
FIX
279,644
REGION270
chr11:49535823-49841095
FIX
305,244
REGION271
chr11:59910346-60087289
NOVEL
181,167
REGION272
chr11:90093878-90364703
NOVEL
301,637
REGION273
chr12:127053477-127193247
NOVEL
154,139
REGION274
chr18:1744182-1884837
NOVEL
163,186
REGION275
chr2:16105575-16187687
FIX
84,043
REGION276
chr2:238772758-238918045
FIX
145,975
REGION277
chr3:75363639-75568796
NOVEL
215,443
REGION278
chr4:32810823-32942229
FIX
125,549
REGION279
chr4:8728948-8923891
FIX
176,674
REGION28
chr17:70306278-70524219
ALT
223,995
REGION280
chr4:31788957-31855391
FIX
53,476
REGION281
chr4:49074722-49336924
FIX
341,066
REGION282
chr4:1421767-1660835
FIX
235,734
REGION283
chr4:58666869-58984981
FIX
276,109
REGION284
chr6:95012984-95133130
FIX
73,265
REGION285
chr9:134176072-134201322
FIX
25,408
REGION286
chr11:87928891-88117772
FIX
165,419
REGION287
chr11:96542549-96587148
FIX
45,257
REGION288
chr11:18251175-18419476
FIX
170,928
REGION289
chr13:111786909-111851680
FIX
158,944
REGION290
chr10:38363173-38781896
FIX
454,963
REGION291
chr14:46309691-46567274
NOVEL
264,228
REGION292
chr22:16124788-16489297
FIX
461,303
REGION293
chr22:49970785-49983074
FIX
12,295
REGION294
chrX:37081326-37291004
FIX
17,435
REGION295
chrX:50213756-50288885
FIX
28,824
REGION296
chrX:114255137-114367567
FIX
68,192
REGION297
chrX:144422134-144483176
FIX
14,678
REGION298
chr10:47739150-48074662
FIX
292,944
REGION299
chr15:74172576-74539995
FIX
369,264
REGION3
chr1:198370083-198725175
ALT
366,580
REGION30
chr17:77220730-77299326
ALT
90,219
REGION300
chr17:7244673-7379543
FIX
137,908
REGION301
chr17:81736740-81843202
FIX
56,695
REGION302
chr11:1809498-2077600
FIX
270,122
REGION303
chr15:101893864-101981189
FIX
97,763
REGION31
chr18:50292194-50574792
ALT
289,831
REGION32
chr18:51662936-51821642
ALT
164,789
REGION33
chr18:67423723-67552551
ALT
198,278
REGION34
chr18:72933122-73024781
ALT
104,552
REGION35
chr18:78493467-78664469
ALT
342,011
REGION36
chr18:78934886-79088997
ALT
317,257
REGION37
chr19:21648290-21809032
ALT
170,222
REGION38
chr19:34152260-34300950
ALT
155,864
REGION39
chr19:22120850-22300666
ALT
188,024
REGION4
chr2:36225959-36363315
ALT
143,390
REGION40
chr20:17771102-17893471
ALT
128,386
REGION41
chr21:14424141-14475471
ALT
63,917
REGION42
chr21:22102474-22296968
ALT
201,197
REGION43
chr21:32769079-32837937
ALT
74,653
REGION44
chr2:148934069-149024119
ALT
96,131
REGION5
chr3:151589366-151759498
ALT
180,671
REGION50
chr12:10001-173298
ALT
167,313
REGION6
chr4:34517955-34883858
ALT
376,187
REGION61
chr5:29036498-29254469
ALT
226,852
REGION7
chr4:155835378-155987264
ALT
164,536
REGION73
chr3:11815268-11986497
ALT
173,151
REGION8
chr5:162373667-162541648
ALT
173,459
REGION9
chr5:12681426-12744010
ALT
82,728
REGION99
chr6:168796076-168951646
ALT
185,823
RFLNB
chr17:402638-722442
FIX
281,919
RNA5S_REGION_1
chr1:228408802-228753027
FIX
330,031
RYBP
chr3:72325441-72740399
FIX
415,308
SAMD1
chr19:13788160-14281006
FIX
493,165
SBNO2
chr19:1107414-1158195
ALT
52,969
SERPIN_REGION_1
chr14:104449322-104622880
ALT
180,703
SHANK3
chr22:50663907-50764925
FIX
101,037
SLC12A7
chr5:981494-1161361
ALT
179,043
SLC14A2_AS1
chr18:45379886-45610729
FIX
230,843
SLC25A26
chr3:66023201-66396803
FIX
373,699
SLC37A4
chr11:118978401-119087276
FIX
108,875
SLC39A4
chr8:144269398-144434518
FIX
165,120
SLC5A11
chr16:24749301-25017484
FIX
270,967
SLC6A3
chr5:1318299-1509772
ALT
195,710
SMA
chr5:69216819-71614443
ALT
2,757,346
SNTB2
chr16:69140151-69224690
ALT
89,672
SPATC1L
chr21:46140942-46221322
ALT
82,692
SPC25
chr2:168830363-168937194
ALT
123,821
TBCE
chr1:235360200-235568613
NOVEL
212,205
TMEM50B
chr21:33405429-33512559
ALT
116,689
TRB
chr7:142038121-143088503
ALT
1,111,570
TRIM69
chr15:44676664-44913053
ALT
244,917
UGT2B17
chr4:68306359-69010457
ALT
586,476
WDR81
chr17:1569973-1767739
ALT
196,688
ZNF66
chr19:20663141-21042381
ALT
385,657
N50 is a measure of contiguity. 50% of the bases reside in a scaffold of this length or greater.
Chromosome
All scaffolds
Placed scaffolds
Unplaced scaffolds
1
121,390,471
121,390,471
127,682
2
147,687,514
147,687,514
161,471
3
104,529,985
104,529,985
155,397
4
131,283,174
131,283,174
209,709
5
46,425,900
46,425,900
92,689
6
110,516,045
110,516,045
0
7
96,829,194
96,829,194
0
8
39,736,957
39,736,957
0
9
70,114,165
70,114,165
176,845
10
92,093,901
92,093,901
0
11
47,073,726
47,073,726
100,316
12
94,988,110
94,988,110
0
13
67,794,873
67,794,873
0
14
88,660,195
88,660,195
194,050
15
78,704,315
78,704,315
448,248
16
43,847,663
43,847,663
1,872,759
17
54,806,562
54,806,562
185,591
18
59,352,079
59,352,079
0
19
31,366,742
31,366,742
0
20
33,282,659
33,282,659
0
21
33,734,175
33,734,175
0
22
31,264,301
31,264,301
165,050
X
34,966,268
34,966,268
0
Y
6,276,129
6,276,129
37,240
Un
161,147
na
161,147
Genome
67,794,873
70,114,165
176,845
Region
Location
Sequence types
Scaffold length
1Q21
chr1:144488706-144674781
ALT
185,285
ABO
chr9:133174055-133504070
FIX
330,164
ABR
chr17:960754-1449331
ALT
391,357
ADAM5
chr8:39094318-39873856
ALT
624,492
APOBEC
chr22:38884294-39011160
ALT
96,924
APOL5
chr22:35685234-35942668
ALT
263,666
B3GNTL1
chr17:82922720-83103577
ALT
178,921
BAGE5
chr13:18171249-18358106
FIX
356,766
C1R
chr12:7071546-7264845
FIX
192,531
CASP8AP2
chr6:89804656-89941739
FIX
139,427
CCL5_TBC1D3
chr17:35765469-38841755
ALT
2,877,074
CEACAM_REGION_1
chr19:41456581-41682000
ALT
233,762
CT47_REGION
chrX:120599933-121083725
FIX
403,128
CTIF
chr18:48514982-48918117
FIX
407,387
CTRB1_CTRB2
chr16:75169811-75248387
NOVEL
78,609
CYP2D6
chr22:42077656-42253758
ALT, NOVEL
156,562
DEFENSIN_REGION_1
chr8:6604731-13171905
ALT, FIX
6,367,528
DOC2B_RPH3AL
chr17:60001-402637
ALT
375,691
ECSCR
chr5:139409472-139500161
FIX
89,956
ELANE
chr19:821158-881412
ALT
61,734
FCGBP
chr19:39740125-40095774
FIX
370,917
FOXO6
chr1:41250328-41436604
FIX
186,494
FRA16A
chr16:16998740-17478916
FIX
480,415
GALNT9
chr12:132092972-132391208
FIX
297,568
GCNT2
chr6:10489117-10731912
FIX
242,796
GPI
chr19:34350807-34392977
ALT
43,156
GUSBP1
chr5:21448370-21713081
NOVEL
362,221
IGH
chr14:92885439-94394539
ALT
1,511,111
IGK
chr2:88891175-89330679
FIX
481,245
IGL
chr22:22373449-22624257
ALT
259,914
KRTAP_REGION_1
chr17:40850733-41432935
ALT
133,151
KRTAP_REGION_2
chr11:1523474-1740879
ALT
214,625
LPPR1
chr9:100948798-101378291
ALT
439,082
LRC_KIR
chr19:54025634-55084318
ALT, NOVEL
729,520
MAMDC2
chr9:70024113-70189318
ALT
171,286
MAPT
chr17:45309498-46903773
ALT
1,821,992
MCTP1
chr5:95169857-95254491
ALT
101,241
MEGF11
chr15:65908183-66284818
ALT
388,773
MHC
chr6:28510120-33480577
ALT
4,677,643
MTX1
chr1:155210382-155305245
ALT
110,268
MUCIN_REGION_1
chr11:937258-1207515
ALT, FIX
196,940
MUCIN_REGION_2
chr3:195629504-195827492
ALT
165,607
NOR_CHR_13
chr13:15590088-16000000
FIX
409,912
NOR_CHR_14
chr14:15600817-16000000
FIX
399,183
NOR_CHR_15
chr15:16603485-17000000
FIX
396,515
NOR_CHR_21
chr21:8310972-8472360
FIX
519,485
NOR_CHR_22
chr22:10097632-10510000
FIX
412,368
OLFACTORY_REGION_1
chr11:56189252-56873567
ALT
200,998
OLFACTORY_REGION_2
chr11:7779133-7972558
ALT, NOVEL
204,059
OLFACTORY_REGION_3
chr1:248352027-248511794
ALT
165,834
OLFACTORY_REGION_4
chr11:49958373-50099251
FIX
140,877
OVOS2
chr12:31111480-31347345
ALT
238,139
PAM16
chr16:4299637-4530534
ALT
232,857
POLR2A
chr17:7379544-7534268
FIX
154,723
PPFIA1
chr11:70244180-70455787
FIX
217,075
PRADER_WILLI
chr15:19775255-24552710
ALT, FIX
5,500,449
PRAME_REGION_1
chr1:12818488-13312803
ALT, FIX, NOVEL
278,659
PRH1_PRR4
chr12:10801295-11377386
ALT
572,349
PTEN
chr10:87784179-88048756
FIX
264,545
RAB11FIP3
chr16:400855-531525
ALT
134,193
REGION10
chr6:79350008-79446911
ALT
124,736
REGION104
chr11:470360-678681
ALT
210,133
REGION105
chr11:2767814-3065846
ALT
296,895
REGION106
chr11:69165291-69229344
ALT
67,707
REGION107
chr11:134773600-134962792
ALT
186,169
REGION108
chr1:2448811-2791270
ALT
354,444
REGION109
chr1:30352191-30456601
ALT
109,528
REGION11
chr7:141633409-141746583
ALT
119,183
REGION110
chr1:234163457-234211370
ALT
50,258
REGION111
chr1:242987893-243895211
ALT
911,658
REGION112
chr1:245305697-245727576
ALT
425,601
REGION113
chr2:728878-860300
ALT
136,240
REGION114
chr2:1204935-1273724
ALT
70,887
REGION115
chr2:1315177-1541254
ALT
223,625
REGION116
chr2:90218337-90402511
ALT
214,158
REGION117
chr2:115908855-116040717
ALT
138,019
REGION118
chr2:116874515-116981849
ALT
110,395
REGION119
chr2:131697037-131806107
ALT
110,099
REGION120
chr2:241787903-242117508
ALT
161,578
REGION121
chr2:3391898-3511146
ALT
120,616
REGION122
chr3:20277967-20382602
ALT
109,187
REGION123
chr3:125665519-125883802
ALT
224,108
REGION124
chr3:154111571-154282042
ALT
173,649
REGION125
chr3:166300784-166544173
ALT
248,252
REGION126
chr3:184425340-184533338
ALT
113,034
REGION127
chr3:197397856-197558882
ALT
162,429
REGION128
chr3:198047549-198235559
ALT
184,404
REGION129
chr4:21521367-21734410
ALT
220,246
REGION13
chr9:69413743-69477097
ALT
71,551
REGION130
chr4:55678095-55785754
ALT
111,943
REGION131
chr4:120164199-120317014
ALT
158,965
REGION132
chr4:186920392-187048061
ALT
119,912
REGION133
chr4:188341423-188542359
ALT
205,944
REGION134
chr4:189361858-190204555
ALT, FIX, NOVEL
378,547
REGION135
chr5:502435-626896
ALT
126,136
REGION136
chr5:33800665-33963236
ALT
164,558
REGION137
chr5:125279466-125444151
ALT
172,708
REGION138
chr5:177865465-177996111
ALT
131,892
REGION139
chr6:65774814-65944033
ALT
175,808
REGION14
chr9:7428994-7577169
ALT
162,988
REGION140
chr6:68262879-68402208
ALT
152,148
REGION141
chr6:127654803-128521146
ALT
870,480
REGION142
chr6:166220580-166285980
ALT
75,005
REGION143
chr6:169724799-169919706
ALT
197,536
REGION144
chr6:170272763-170535221
ALT
271,782
REGION145
chr7:10001-279542
ALT, FIX
190,869
REGION146
chr7:76500982-76722751
ALT
209,586
REGION147
chr7:103086563-103242097
ALT
158,166
REGION148
chr7:148214874-148487860
ALT
271,455
REGION149
chr7:157697532-157820586
ALT
126,434
REGION15
chr9:88179047-88227980
ALT
60,032
REGION150
chr7:158267495-158477174
ALT
209,988
REGION151
chr8:718410-2817440
ALT
318,687
REGION152
chr8:57173351-57303398
ALT
141,812
REGION153
chr8:128554723-128925740
ALT
374,415
REGION154
chr8:141333447-141461079
ALT
133,535
REGION155
chr8:141766834-141800272
ALT
36,640
REGION156
chr8:143009713-143163398
ALT
158,983
REGION157
chr8:143509961-143828794
ALT
305,841
REGION158
chr8:144628750-144757761
ALT
132,244
REGION159
chr10:42103240-42298939
ALT
181,496
REGION16
chr10:27285655-27417608
ALT
179,254
REGION160
chr10:77761309-77931226
ALT
188,315
REGION161
chr12:123826509-123945954
ALT
119,498
REGION162
chr12:130323076-130394967
ALT
76,061
REGION163
chr12:131543020-131584984
ALT
56,134
REGION164
chr13:18698351-18884136
ALT
191,684
REGION165
chr13:25652362-25828680
ALT
180,306
REGION166
chr13:70341886-70442876
ALT
103,832
REGION167
chr13:89598964-89764093
ALT
169,134
REGION168
chr13:112182875-112505943
ALT
306,913
REGION169
chr13:113649178-113763795
ALT, FIX
65,394
REGION170
chr14:91535865-91854371
ALT
322,166
REGION171
chr14:105533003-106860219
ALT
1,351,393
REGION172
chr15:82289984-82641774
ALT
430,880
REGION173
chr16:1871895-1933852
ALT
63,982
REGION174
chr16:14427144-16998739
ALT
2,659,700
REGION175
chr17:71584518-71819311
ALT
235,827
REGION176
chr17:72833331-72935743
ALT, NOVEL
116,753
REGION177
chr18:43667277-43773892
ALT
111,737
REGION178
chr18:79563122-79725366
ALT
167,999
REGION179
chr20:61886306-62008187
ALT
118,774
REGION18
chr10:45175233-45468971
ALT
309,802
REGION180
chr20:64095055-64274842
ALT
183,433
REGION181
chr20:63414721-63471095
ALT
58,661
REGION182
chr21:17146893-17310433
ALT
166,743
REGION183
chr21:17603695-17744061
ALT
143,900
REGION184
chr22:23354043-23516062
ALT
186,262
REGION185
chr22:23763639-24013509
ALT
304,135
REGION186
chr22:36779214-36877704
ALT
101,331
REGION187
chrX:319338-601516
ALT
284,869
REGION188
chrX:79965154-80097082
ALT
144,206
REGION189
chr1:26512383-26678582
FIX
166,200
REGION19
chr11:25170407-25319080
ALT
154,407
REGION190
chr1:112909422-113029606
FIX
122,022
REGION191
chr3:91247723-91553319
FIX
305,979
REGION192
chr3:44474647-44925818
FIX
451,168
REGION193
chr5:21098347-21230960
NOVEL
139,087
REGION194
chr6:67533466-67796090
FIX
268,330
REGION195
chr10:74797382-75073121
FIX
277,797
REGION196
chr12:17717409-17928910
FIX
211,377
REGION197
chr13:86200738-86292877
FIX
35,455
REGION198
chrY:56821510-56887902
FIX
101,150
REGION199
chr1:210220259-210677001
FIX
460,100
REGION2
chr1:153700531-153865738
ALT
182,439
REGION20
chr12:126227198-126405474
ALT
184,319
REGION200
chr1:17157487-17460319
FIX
305,542
REGION201
chr2:233054663-233420161
FIX
365,499
REGION202
chr2:239696904-239905046
FIX
208,149
REGION203
chr10:131588434-131607480
FIX
14,347
REGION204
chr10:124109957-124195365
FIX
85,284
REGION205
chr10:38918270-39338430
FIX
420,164
REGION206
chr12:12031003-12572035
FIX
541,038
REGION207
chr12:122057735-122145576
FIX
86,533
REGION208
chr13:100900735-101049613
FIX
148,762
REGION209
chr13:113936976-114147229
FIX
206,320
REGION21
chr12:27996034-28110778
ALT
120,804
REGION210
chr3:90528825-90699772
FIX
165,718
REGION211
chr6:61123605-61470683
FIX
320,750
REGION212
chr7:154422352-154602937
FIX
179,932
REGION213
chr16:75930096-76091406
NOVEL
169,136
REGION214
chr6:82140389-82375901
FIX
245,716
REGION215
chr11:92232311-92410192
FIX
181,958
REGION216
chr10:65503225-65684914
NOVEL
185,507
REGION217
chr12:1033530-1135924
NOVEL
109,323
REGION218
chr13:84294441-84452423
NOVEL
168,146
REGION219
chr13:108604134-108722945
NOVEL
123,480
REGION22
chr12:57932737-58092755
ALT
169,178
REGION220
chr16:71137292-71399966
NOVEL
267,463
REGION221
chr16:2820536-2873621
NOVEL
59,016
REGION222
chr4:14931450-15019028
NOVEL
90,922
REGION223
chr4:65880454-66040277
NOVEL
163,749
REGION224
chr4:69959865-70191926
NOVEL
236,512
REGION225
chr6:13101650-13179113
NOVEL
82,315
REGION226
chr9:8983671-9142737
NOVEL
163,882
REGION227
chr9:24949709-25079413
NOVEL
134,099
REGION228
chr1:23237486-23579959
NOVEL
349,938
REGION229
chr1:103909381-104045121
NOVEL
141,019
REGION23
chr12:58929265-59060870
ALT
138,655
REGION230
chr18:22388680-22588100
NOVEL
205,101
REGION231
chr19:38590365-38995717
FIX
405,389
REGION232
chr12:86768210-87083988
FIX
315,610
REGION233
chr2:205890983-206421450
NOVEL
535,088
REGION234
chr5:179235294-179907499
FIX
673,059
REGION235
chr3:16687511-17099186
FIX
411,654
REGION236
chr4:154079465-154493046
NOVEL
420,675
REGION237
chr17:52434177-52673566
NOVEL
246,895
REGION238
chr17:18239627-18506313
NOVEL
276,292
REGION239
chrX:4950957-5129468
NOVEL
188,004
REGION24
chr12:101111599-101258295
ALT
152,874
REGION240
chr1:107987825-108539424
NOVEL
551,020
REGION241
chr7:99092372-99228806
FIX
142,129
REGION242
chr7:107154479-107622612
FIX
468,267
REGION243
chr8:21395510-21659610
FIX
265,876
REGION244
chr8:57022151-57173350
FIX
156,998
REGION245
chr16:21176310-22760988
FIX
1,927,115
REGION246
chr1:28206357-28366763
NOVEL
166,136
REGION247
chr1:72287734-72419130
NOVEL
140,355
REGION248
chr2:126189128-126361783
NOVEL
181,658
REGION249
chr2:208007848-208142067
NOVEL
140,361
REGION25
chr15:27865714-32946929
ALT, NOVEL
5,161,414
REGION250
chr3:84799968-84960626
NOVEL
175,849
REGION251
chr5:3768476-3899281
NOVEL
135,987
REGION252
chr7:143380637-144630931
FIX, NOVEL
680,662
REGION253
chr12:1657857-2698722
FIX
1,046,838
REGION254
chr12:121594225-121658918
FIX
64,689
REGION255
chr12:86094144-86261655
NOVEL
174,808
REGION256
chr14:23699022-24389954
FIX
690,932
REGION257
chr14:63664049-63829157
NOVEL
171,798
REGION258
chr18:70423088-70510260
FIX
93,070
REGION259
chrY:9034110-9132718
FIX
48,370
REGION26
chr16:55772981-55968548
ALT
192,462
REGION260
chrY:21578942-21828659
FIX
209,722
REGION261
chr1:29545040-29590578
FIX
44,955
REGION262
chr3:94896163-94997637
FIX
105,527
REGION263
chr3:112116711-112302325
NOVEL
195,063
REGION264
chr3:128137812-128433766
NOVEL
302,885
REGION265
chr3:175333210-175524240
NOVEL
197,752
REGION266
chr3:176115490-176274065
NOVEL
164,041
REGION267
chr7:9026358-9192359
NOVEL
172,555
REGION268
chr8:129724678-129818699
NOVEL
103,072
REGION269
chr11:47572175-47847277
FIX
279,644
REGION270
chr11:49535823-49841095
FIX
305,244
REGION271
chr11:59910346-60087289
NOVEL
181,167
REGION272
chr11:90093878-90364703
NOVEL
301,637
REGION273
chr12:127053477-127193247
NOVEL
154,139
REGION274
chr18:1744182-1884837
NOVEL
163,186
REGION275
chr2:16105575-16187687
FIX
84,043
REGION276
chr2:238772758-238918045
FIX
145,975
REGION277
chr3:75363639-75568796
NOVEL
215,443
REGION278
chr4:32810823-32942229
FIX
125,549
REGION279
chr4:8728948-8923891
FIX
176,674
REGION28
chr17:70306278-70524219
ALT
223,995
REGION280
chr4:31788957-31855391
FIX
53,476
REGION281
chr4:49074722-49336924
FIX
341,066
REGION282
chr4:1421767-1660835
FIX
235,734
REGION283
chr4:58666869-58984981
FIX
276,109
REGION284
chr6:95012984-95133130
FIX
73,265
REGION285
chr9:134176072-134201322
FIX
25,408
REGION286
chr11:87928891-88117772
FIX
165,419
REGION287
chr11:96542549-96587148
FIX
45,257
REGION288
chr11:18251175-18419476
FIX
170,928
REGION289
chr13:111786909-111851680
FIX
158,944
REGION290
chr10:38363173-38781896
FIX
454,963
REGION291
chr14:46309691-46567274
NOVEL
264,228
REGION292
chr22:16124788-16489297
FIX
461,303
REGION293
chr22:49970785-49983074
FIX
12,295
REGION294
chrX:37081326-37291004
FIX
17,435
REGION295
chrX:50213756-50288885
FIX
28,824
REGION296
chrX:114255137-114367567
FIX
68,192
REGION297
chrX:144422134-144483176
FIX
14,678
REGION298
chr10:47739150-48074662
FIX
292,944
REGION299
chr15:74172576-74539995
FIX
369,264
REGION3
chr1:198370083-198725175
ALT
366,580
REGION30
chr17:77220730-77299326
ALT
90,219
REGION300
chr17:7244673-7379543
FIX
137,908
REGION301
chr17:81736740-81843202
FIX
56,695
REGION302
chr11:1809498-2077600
FIX
270,122
REGION303
chr15:101893864-101981189
FIX
97,763
REGION31
chr18:50292194-50574792
ALT
289,831
REGION32
chr18:51662936-51821642
ALT
164,789
REGION33
chr18:67423723-67552551
ALT
198,278
REGION34
chr18:72933122-73024781
ALT
104,552
REGION35
chr18:78493467-78664469
ALT
174,061
REGION36
chr18:78934886-79088997
ALT
159,547
REGION37
chr19:21648290-21809032
ALT
170,222
REGION38
chr19:34152260-34300950
ALT
155,864
REGION39
chr19:22120850-22300666
ALT
188,024
REGION4
chr2:36225959-36363315
ALT
143,390
REGION40
chr20:17771102-17893471
ALT
128,386
REGION41
chr21:14424141-14475471
ALT
63,917
REGION42
chr21:22102474-22296968
ALT
201,197
REGION43
chr21:32769079-32837937
ALT
74,653
REGION44
chr2:148934069-149024119
ALT
96,131
REGION5
chr3:151589366-151759498
ALT
180,671
REGION50
chr12:10001-173298
ALT
167,313
REGION6
chr4:34517955-34883858
ALT
376,187
REGION61
chr5:29036498-29254469
ALT
226,852
REGION7
chr4:155835378-155987264
ALT
164,536
REGION73
chr3:11815268-11986497
ALT
173,151
REGION8
chr5:162373667-162541648
ALT
173,459
REGION9
chr5:12681426-12744010
ALT
82,728
REGION99
chr6:168796076-168951646
ALT
185,823
RFLNB
chr17:402638-722442
FIX
281,919
RNA5S_REGION_1
chr1:228408802-228753027
FIX
330,031
RYBP
chr3:72325441-72740399
FIX
415,308
SAMD1
chr19:13788160-14281006
FIX
493,165
SBNO2
chr19:1107414-1158195
ALT
52,969
SERPIN_REGION_1
chr14:104449322-104622880
ALT
180,703
SHANK3
chr22:50663907-50764925
FIX
101,037
SLC12A7
chr5:981494-1161361
ALT
179,043
SLC14A2_AS1
chr18:45379886-45610729
FIX
230,843
SLC25A26
chr3:66023201-66396803
FIX
373,699
SLC37A4
chr11:118978401-119087276
FIX
108,875
SLC39A4
chr8:144269398-144434518
FIX
165,120
SLC5A11
chr16:24749301-25017484
FIX
270,967
SLC6A3
chr5:1318299-1509772
ALT
195,710
SMA
chr5:69216819-71614443
ALT
1,612,928
SNTB2
chr16:69140151-69224690
ALT
89,672
SPATC1L
chr21:46140942-46221322
ALT
82,692
SPC25
chr2:168830363-168937194
ALT
123,821
TBCE
chr1:235360200-235568613
NOVEL
212,205
TMEM50B
chr21:33405429-33512559
ALT
116,689
TRB
chr7:142038121-143088503
ALT
1,111,570
TRIM69
chr15:44676664-44913053
ALT
244,917
UGT2B17
chr4:68306359-69010457
ALT
586,476
WDR81
chr17:1569973-1767739
ALT
196,688
ZNF66
chr19:20663141-21042381
ALT
385,657
Ungapped lengths are calculated by summing the length of sequenced bases only. 'Ns' are excluded.
Chromosome
All scaffolds
Placed scaffolds
Unplaced scaffolds
1
231,223,641
230,481,121
742,520
2
240,863,511
240,548,241
315,270
3
198,255,541
198,100,144
155,397
4
189,962,376
189,752,667
209,709
5
181,358,067
181,265,378
92,689
6
170,078,524
170,078,524
0
7
158,970,135
158,970,135
0
8
144,768,136
144,768,136
0
9
122,084,564
121,790,553
294,011
10
133,263,006
133,263,006
0
11
134,634,058
134,533,742
100,316
12
133,137,821
133,137,821
0
13
97,983,128
97,983,128
0
14
91,660,769
90,568,149
1,092,620
15
85,089,576
84,641,328
448,248
16
83,378,703
81,805,944
1,572,759
17
83,481,871
82,920,216
561,655
18
80,089,650
80,089,650
0
19
58,440,758
58,440,758
0
20
63,944,268
63,944,268
0
21
40,088,623
40,088,623
0
22
40,181,019
39,159,782
1,021,237
X
154,893,034
154,893,034
0
Y
26,452,288
26,415,048
37,240
Un
4,328,403
na
4,328,403
Genome
2,948,611,470
2,937,639,396
10,972,074
Region
Location
Sequence types
Scaffold length
1Q21
chr1:144488706-144674781
ALT
185,285
ABO
chr9:133174055-133504070
FIX
330,164
ABR
chr17:960754-1449331
ALT
548,456
ADAM5
chr8:39094318-39873856
ALT
624,492
APOBEC
chr22:38884294-39011160
ALT
96,924
APOL5
chr22:35685234-35942668
ALT
263,666
B3GNTL1
chr17:82922720-83103577
ALT
178,921
BAGE5
chr13:18171249-18358106
FIX
356,766
C1R
chr12:7071546-7264845
FIX
192,531
CASP8AP2
chr6:89804656-89941739
FIX
139,427
CCL5_TBC1D3
chr17:35765469-38841755
ALT
3,202,874
CEACAM_REGION_1
chr19:41456581-41682000
ALT
233,762
CT47_REGION
chrX:120599933-121083725
FIX
403,128
CTIF
chr18:48514982-48918117
FIX
407,387
CTRB1_CTRB2
chr16:75169811-75248387
NOVEL
78,609
CYP2D6
chr22:42077656-42253758
ALT, NOVEL
1,198,357
DEFENSIN_REGION_1
chr8:6604731-13171905
ALT, FIX
6,667,758
DOC2B_RPH3AL
chr17:60001-402637
ALT
513,412
ECSCR
chr5:139409472-139500161
FIX
89,956
ELANE
chr19:821158-881412
ALT
61,734
FCGBP
chr19:39740125-40095774
FIX
370,917
FOXO6
chr1:41250328-41436604
FIX
186,494
FRA16A
chr16:16998740-17478916
FIX
480,415
GALNT9
chr12:132092972-132391208
FIX
297,568
GCNT2
chr6:10489117-10731912
FIX
242,796
GPI
chr19:34350807-34392977
ALT
43,156
GUSBP1
chr5:21448370-21713081
NOVEL
362,221
IGH
chr14:92885439-94394539
ALT
1,511,111
IGK
chr2:88891175-89330679
FIX
481,245
IGL
chr22:22373449-22624257
ALT
259,914
KRTAP_REGION_1
chr17:40850733-41432935
ALT
569,697
KRTAP_REGION_2
chr11:1523474-1740879
ALT
391,717
LPPR1
chr9:100948798-101378291
ALT
439,082
LRC_KIR
chr19:54025634-55084318
ALT, NOVEL
13,515,256
MAMDC2
chr9:70024113-70189318
ALT
171,286
MAPT
chr17:45309498-46903773
ALT
3,195,182
MCTP1
chr5:95169857-95254491
ALT
101,241
MEGF11
chr15:65908183-66284818
ALT
388,773
MHC
chr6:28510120-33480577
ALT
27,789,994
MTX1
chr1:155210382-155305245
ALT
110,268
MUCIN_REGION_1
chr11:937258-1207515
ALT, FIX
522,263
MUCIN_REGION_2
chr3:195629504-195827492
ALT
1,225,334
NOR_CHR_13
chr13:15590088-16000000
FIX
409,912
NOR_CHR_14
chr14:15600817-16000000
FIX
399,183
NOR_CHR_15
chr15:16603485-17000000
FIX
396,515
NOR_CHR_21
chr21:8310972-8472360
FIX
519,485
NOR_CHR_22
chr22:10097632-10510000
FIX
412,368
OLFACTORY_REGION_1
chr11:56189252-56873567
ALT
392,407
OLFACTORY_REGION_2
chr11:7779133-7972558
ALT, NOVEL
407,611
OLFACTORY_REGION_3
chr1:248352027-248511794
ALT
328,046
OLFACTORY_REGION_4
chr11:49958373-50099251
FIX
140,877
OVOS2
chr12:31111480-31347345
ALT
238,139
PAM16
chr16:4299637-4530534
ALT
232,857
POLR2A
chr17:7379544-7534268
FIX
154,723
PPFIA1
chr11:70244180-70455787
FIX
217,075
PRADER_WILLI
chr15:19775255-24552710
ALT, FIX
6,766,268
PRAME_REGION_1
chr1:12818488-13312803
ALT, FIX, NOVEL
1,002,073
PRH1_PRR4
chr12:10801295-11377386
ALT
1,020,710
PTEN
chr10:87784179-88048756
FIX
264,545
RAB11FIP3
chr16:400855-531525
ALT
134,193
REGION10
chr6:79350008-79446911
ALT
124,736
REGION104
chr11:470360-678681
ALT
210,133
REGION105
chr11:2767814-3065846
ALT
296,895
REGION106
chr11:69165291-69229344
ALT
67,707
REGION107
chr11:134773600-134962792
ALT
186,169
REGION108
chr1:2448811-2791270
ALT
304,444
REGION109
chr1:30352191-30456601
ALT
109,528
REGION11
chr7:141633409-141746583
ALT
119,183
REGION110
chr1:234163457-234211370
ALT
50,258
REGION111
chr1:242987893-243895211
ALT
911,658
REGION112
chr1:245305697-245727576
ALT
425,601
REGION113
chr2:728878-860300
ALT
136,240
REGION114
chr2:1204935-1273724
ALT
70,887
REGION115
chr2:1315177-1541254
ALT
223,625
REGION116
chr2:90218337-90402511
ALT
347,199
REGION117
chr2:115908855-116040717
ALT
138,019
REGION118
chr2:116874515-116981849
ALT
110,395
REGION119
chr2:131697037-131806107
ALT
110,099
REGION120
chr2:241787903-242117508
ALT
496,962
REGION121
chr2:3391898-3511146
ALT
120,616
REGION122
chr3:20277967-20382602
ALT
109,187
REGION123
chr3:125665519-125883802
ALT
224,108
REGION124
chr3:154111571-154282042
ALT
173,649
REGION125
chr3:166300784-166544173
ALT
248,252
REGION126
chr3:184425340-184533338
ALT
113,034
REGION127
chr3:197397856-197558882
ALT
162,429
REGION128
chr3:198047549-198235559
ALT
184,404
REGION129
chr4:21521367-21734410
ALT
220,246
REGION13
chr9:69413743-69477097
ALT
71,551
REGION130
chr4:55678095-55785754
ALT
111,943
REGION131
chr4:120164199-120317014
ALT
158,965
REGION132
chr4:186920392-187048061
ALT
119,912
REGION133
chr4:188341423-188542359
ALT
205,944
REGION134
chr4:189361858-190204555
ALT, FIX, NOVEL
1,614,283
REGION135
chr5:502435-626896
ALT
126,136
REGION136
chr5:33800665-33963236
ALT
164,558
REGION137
chr5:125279466-125444151
ALT
172,708
REGION138
chr5:177865465-177996111
ALT
262,849
REGION139
chr6:65774814-65944033
ALT
175,808
REGION14
chr9:7428994-7577169
ALT
162,988
REGION140
chr6:68262879-68402208
ALT
152,148
REGION141
chr6:127654803-128521146
ALT
870,480
REGION142
chr6:166220580-166285980
ALT
75,005
REGION143
chr6:169724799-169919706
ALT
197,536
REGION144
chr6:170272763-170535221
ALT
271,782
REGION145
chr7:10001-279542
ALT, FIX
603,580
REGION146
chr7:76500982-76722751
ALT
209,586
REGION147
chr7:103086563-103242097
ALT
158,166
REGION148
chr7:148214874-148487860
ALT
271,455
REGION149
chr7:157697532-157820586
ALT
126,434
REGION15
chr9:88179047-88227980
ALT
60,032
REGION150
chr7:158267495-158477174
ALT
209,988
REGION151
chr8:718410-2817440
ALT
2,391,212
REGION152
chr8:57173351-57303398
ALT
141,812
REGION153
chr8:128554723-128925740
ALT
374,415
REGION154
chr8:141333447-141461079
ALT
133,535
REGION155
chr8:141766834-141800272
ALT
36,640
REGION156
chr8:143009713-143163398
ALT
158,983
REGION157
chr8:143509961-143828794
ALT
305,841
REGION158
chr8:144628750-144757761
ALT
132,244
REGION159
chr10:42103240-42298939
ALT
181,496
REGION16
chr10:27285655-27417608
ALT
179,254
REGION160
chr10:77761309-77931226
ALT
188,315
REGION161
chr12:123826509-123945954
ALT
119,498
REGION162
chr12:130323076-130394967
ALT
76,061
REGION163
chr12:131543020-131584984
ALT
56,134
REGION164
chr13:18698351-18884136
ALT
191,684
REGION165
chr13:25652362-25828680
ALT
180,306
REGION166
chr13:70341886-70442876
ALT
103,832
REGION167
chr13:89598964-89764093
ALT
169,134
REGION168
chr13:112182875-112505943
ALT
306,913
REGION169
chr13:113649178-113763795
ALT, FIX
102,681
REGION170
chr14:91535865-91854371
ALT
322,166
REGION171
chr14:105533003-106860219
ALT
1,351,393
REGION172
chr15:82289984-82641774
ALT
430,880
REGION173
chr16:1871895-1933852
ALT
63,982
REGION174
chr16:14427144-16998739
ALT
2,659,700
REGION175
chr17:71584518-71819311
ALT
235,827
REGION176
chr17:72833331-72935743
ALT, NOVEL
225,516
REGION177
chr18:43667277-43773892
ALT
111,737
REGION178
chr18:79563122-79725366
ALT
167,999
REGION179
chr20:61886306-62008187
ALT
118,774
REGION18
chr10:45175233-45468971
ALT
309,802
REGION180
chr20:64095055-64274842
ALT
183,433
REGION181
chr20:63414721-63471095
ALT
58,661
REGION182
chr21:17146893-17310433
ALT
166,743
REGION183
chr21:17603695-17744061
ALT
143,900
REGION184
chr22:23354043-23516062
ALT
186,262
REGION185
chr22:23763639-24013509
ALT
304,135
REGION186
chr22:36779214-36877704
ALT
101,331
REGION187
chrX:319338-601516
ALT
558,878
REGION188
chrX:79965154-80097082
ALT
144,206
REGION189
chr1:26512383-26678582
FIX
166,200
REGION19
chr11:25170407-25319080
ALT
154,407
REGION190
chr1:112909422-113029606
FIX
122,022
REGION191
chr3:91247723-91553319
FIX
284,852
REGION192
chr3:44474647-44925818
FIX
451,168
REGION193
chr5:21098347-21230960
NOVEL
139,087
REGION194
chr6:67533466-67796090
FIX
268,330
REGION195
chr10:74797382-75073121
FIX
277,797
REGION196
chr12:17717409-17928910
FIX
211,377
REGION197
chr13:86200738-86292877
FIX
42,764
REGION198
chrY:56821510-56887902
FIX
101,150
REGION199
chr1:210220259-210677001
FIX
460,100
REGION2
chr1:153700531-153865738
ALT
182,439
REGION20
chr12:126227198-126405474
ALT
184,319
REGION200
chr1:17157487-17460319
FIX
305,542
REGION201
chr2:233054663-233420161
FIX
365,499
REGION202
chr2:239696904-239905046
FIX
208,149
REGION203
chr10:131588434-131607480
FIX
14,347
REGION204
chr10:124109957-124195365
FIX
85,284
REGION205
chr10:38918270-39338430
FIX
420,164
REGION206
chr12:12031003-12572035
FIX
541,038
REGION207
chr12:122057735-122145576
FIX
86,533
REGION208
chr13:100900735-101049613
FIX
148,762
REGION209
chr13:113936976-114147229
FIX
206,320
REGION21
chr12:27996034-28110778
ALT
120,804
REGION210
chr3:90528825-90699772
FIX
165,718
REGION211
chr6:61123605-61470683
FIX
320,750
REGION212
chr7:154422352-154602937
FIX
179,932
REGION213
chr16:75930096-76091406
NOVEL
169,136
REGION214
chr6:82140389-82375901
FIX
245,716
REGION215
chr11:92232311-92410192
FIX
181,958
REGION216
chr10:65503225-65684914
NOVEL
185,507
REGION217
chr12:1033530-1135924
NOVEL
109,323
REGION218
chr13:84294441-84452423
NOVEL
168,146
REGION219
chr13:108604134-108722945
NOVEL
123,480
REGION22
chr12:57932737-58092755
ALT
169,178
REGION220
chr16:71137292-71399966
NOVEL
267,463
REGION221
chr16:2820536-2873621
NOVEL
59,016
REGION222
chr4:14931450-15019028
NOVEL
90,922
REGION223
chr4:65880454-66040277
NOVEL
163,749
REGION224
chr4:69959865-70191926
NOVEL
236,512
REGION225
chr6:13101650-13179113
NOVEL
82,315
REGION226
chr9:8983671-9142737
NOVEL
163,882
REGION227
chr9:24949709-25079413
NOVEL
134,099
REGION228
chr1:23237486-23579959
NOVEL
349,938
REGION229
chr1:103909381-104045121
NOVEL
141,019
REGION23
chr12:58929265-59060870
ALT
138,655
REGION230
chr18:22388680-22588100
NOVEL
205,101
REGION231
chr19:38590365-38995717
FIX
405,389
REGION232
chr12:86768210-87083988
FIX
315,610
REGION233
chr2:205890983-206421450
NOVEL
535,088
REGION234
chr5:179235294-179907499
FIX
673,059
REGION235
chr3:16687511-17099186
FIX
411,654
REGION236
chr4:154079465-154493046
NOVEL
420,675
REGION237
chr17:52434177-52673566
NOVEL
246,895
REGION238
chr17:18239627-18506313
NOVEL
276,292
REGION239
chrX:4950957-5129468
NOVEL
188,004
REGION24
chr12:101111599-101258295
ALT
152,874
REGION240
chr1:107987825-108539424
NOVEL
551,020
REGION241
chr7:99092372-99228806
FIX
142,129
REGION242
chr7:107154479-107622612
FIX
468,267
REGION243
chr8:21395510-21659610
FIX
265,876
REGION244
chr8:57022151-57173350
FIX
156,998
REGION245
chr16:21176310-22760988
FIX
1,927,115
REGION246
chr1:28206357-28366763
NOVEL
166,136
REGION247
chr1:72287734-72419130
NOVEL
140,355
REGION248
chr2:126189128-126361783
NOVEL
181,658
REGION249
chr2:208007848-208142067
NOVEL
140,361
REGION25
chr15:27865714-32946929
ALT, NOVEL
6,079,372
REGION250
chr3:84799968-84960626
NOVEL
175,849
REGION251
chr5:3768476-3899281
NOVEL
135,987
REGION252
chr7:143380637-144630931
FIX, NOVEL
1,270,318
REGION253
chr12:1657857-2698722
FIX
1,046,838
REGION254
chr12:121594225-121658918
FIX
64,689
REGION255
chr12:86094144-86261655
NOVEL
174,808
REGION256
chr14:23699022-24389954
FIX
690,932
REGION257
chr14:63664049-63829157
NOVEL
171,798
REGION258
chr18:70423088-70510260
FIX
93,070
REGION259
chrY:9034110-9132718
FIX
48,370
REGION26
chr16:55772981-55968548
ALT
192,462
REGION260
chrY:21578942-21828659
FIX
209,722
REGION261
chr1:29545040-29590578
FIX
44,955
REGION262
chr3:94896163-94997637
FIX
105,527
REGION263
chr3:112116711-112302325
NOVEL
195,063
REGION264
chr3:128137812-128433766
NOVEL
302,885
REGION265
chr3:175333210-175524240
NOVEL
197,752
REGION266
chr3:176115490-176274065
NOVEL
164,041
REGION267
chr7:9026358-9192359
NOVEL
172,555
REGION268
chr8:129724678-129818699
NOVEL
103,072
REGION269
chr11:47572175-47847277
FIX
279,644
REGION270
chr11:49535823-49841095
FIX
305,244
REGION271
chr11:59910346-60087289
NOVEL
181,167
REGION272
chr11:90093878-90364703
NOVEL
301,637
REGION273
chr12:127053477-127193247
NOVEL
154,139
REGION274
chr18:1744182-1884837
NOVEL
163,186
REGION275
chr2:16105575-16187687
FIX
84,043
REGION276
chr2:238772758-238918045
FIX
145,975
REGION277
chr3:75363639-75568796
NOVEL
215,443
REGION278
chr4:32810823-32942229
FIX
125,549
REGION279
chr4:8728948-8923891
FIX
176,674
REGION28
chr17:70306278-70524219
ALT
223,995
REGION280
chr4:31788957-31855391
FIX
53,476
REGION281
chr4:49074722-49336924
FIX
341,066
REGION282
chr4:1421767-1660835
FIX
235,734
REGION283
chr4:58666869-58984981
FIX
276,109
REGION284
chr6:95012984-95133130
FIX
73,265
REGION285
chr9:134176072-134201322
FIX
25,408
REGION286
chr11:87928891-88117772
FIX
165,419
REGION287
chr11:96542549-96587148
FIX
45,257
REGION288
chr11:18251175-18419476
FIX
170,928
REGION289
chr13:111786909-111851680
FIX
158,944
REGION290
chr10:38363173-38781896
FIX
454,963
REGION291
chr14:46309691-46567274
NOVEL
264,228
REGION292
chr22:16124788-16489297
FIX
461,303
REGION293
chr22:49970785-49983074
FIX
12,295
REGION294
chrX:37081326-37291004
FIX
17,435
REGION295
chrX:50213756-50288885
FIX
28,824
REGION296
chrX:114255137-114367567
FIX
68,192
REGION297
chrX:144422134-144483176
FIX
14,678
REGION298
chr10:47739150-48074662
FIX
292,944
REGION299
chr15:74172576-74539995
FIX
369,264
REGION3
chr1:198370083-198725175
ALT
366,580
REGION30
chr17:77220730-77299326
ALT
90,219
REGION300
chr17:7244673-7379543
FIX
137,908
REGION301
chr17:81736740-81843202
FIX
56,695
REGION302
chr11:1809498-2077600
FIX
270,122
REGION303
chr15:101893864-101981189
FIX
97,763
REGION31
chr18:50292194-50574792
ALT
289,831
REGION32
chr18:51662936-51821642
ALT
164,789
REGION33
chr18:67423723-67552551
ALT
148,278
REGION34
chr18:72933122-73024781
ALT
104,552
REGION35
chr18:78493467-78664469
ALT
342,011
REGION36
chr18:78934886-79088997
ALT
317,257
REGION37
chr19:21648290-21809032
ALT
170,222
REGION38
chr19:34152260-34300950
ALT
155,864
REGION39
chr19:22120850-22300666
ALT
188,024
REGION4
chr2:36225959-36363315
ALT
143,390
REGION40
chr20:17771102-17893471
ALT
128,386
REGION41
chr21:14424141-14475471
ALT
63,917
REGION42
chr21:22102474-22296968
ALT
201,197
REGION43
chr21:32769079-32837937
ALT
74,653
REGION44
chr2:148934069-149024119
ALT
96,131
REGION5
chr3:151589366-151759498
ALT
180,671
REGION50
chr12:10001-173298
ALT
167,313
REGION6
chr4:34517955-34883858
ALT
376,187
REGION61
chr5:29036498-29254469
ALT
226,852
REGION7
chr4:155835378-155987264
ALT
164,536
REGION73
chr3:11815268-11986497
ALT
173,151
REGION8
chr5:162373667-162541648
ALT
173,459
REGION9
chr5:12681426-12744010
ALT
82,728
REGION99
chr6:168796076-168951646
ALT
185,823
RFLNB
chr17:402638-722442
FIX
281,919
RNA5S_REGION_1
chr1:228408802-228753027
FIX
330,031
RYBP
chr3:72325441-72740399
FIX
415,308
SAMD1
chr19:13788160-14281006
FIX
493,165
SBNO2
chr19:1107414-1158195
ALT
52,969
SERPIN_REGION_1
chr14:104449322-104622880
ALT
180,703
SHANK3
chr22:50663907-50764925
FIX
101,037
SLC12A7
chr5:981494-1161361
ALT
179,043
SLC14A2_AS1
chr18:45379886-45610729
FIX
230,843
SLC25A26
chr3:66023201-66396803
FIX
373,699
SLC37A4
chr11:118978401-119087276
FIX
108,875
SLC39A4
chr8:144269398-144434518
FIX
165,120
SLC5A11
chr16:24749301-25017484
FIX
270,967
SLC6A3
chr5:1318299-1509772
ALT
195,710
SMA
chr5:69216819-71614443
ALT
2,607,346
SNTB2
chr16:69140151-69224690
ALT
89,672
SPATC1L
chr21:46140942-46221322
ALT
82,692
SPC25
chr2:168830363-168937194
ALT
123,821
TBCE
chr1:235360200-235568613
NOVEL
212,205
TMEM50B
chr21:33405429-33512559
ALT
116,689
TRB
chr7:142038121-143088503
ALT
1,111,570
TRIM69
chr15:44676664-44913053
ALT
244,917
UGT2B17
chr4:68306359-69010457
ALT
586,476
WDR81
chr17:1569973-1767739
ALT
196,688
ZNF66
chr19:20663141-21042381
ALT
385,657
Spanned gaps are found within scaffolds and there is some evidence suggesting linkage
between the two sequences flanking the gap. Unspanned gaps are found between scaffolds and
there is no evidence of linkage.
Spanned gaps
Unspanned gaps
Chromosome
All scaffolds
Placed scaffolds
Unplaced scaffolds
All scaffolds
Placed scaffolds
Unplaced scaffolds
1
64
64
0
13
13
0
2
14
14
0
8
8
0
3
13
13
0
8
8
0
4
8
8
0
10
10
0
5
19
19
0
19
19
0
6
10
10
0
6
6
0
7
10
10
0
7
7
0
8
5
5
0
9
9
0
9
21
21
0
23
23
0
10
30
30
0
7
7
0
11
10
10
0
9
9
0
12
15
15
0
10
10
0
13
1
1
0
21
21
0
14
7
7
0
20
20
0
15
9
9
0
9
9
0
16
17
11
6
12
12
0
17
39
25
14
12
12
0
18
23
23
0
14
14
0
19
1
1
0
9
9
0
20
61
61
0
21
21
0
21
7
7
0
42
42
0
22
25
7
18
38
38
0
X
19
19
0
10
10
0
Y
44
44
0
12
12
0
Un
54
na
54
0
na
0
Genome
526
434
92
349
349
0
Region
Location
Sequence types
Scaffolds
Spanned gaps
Unspanned gaps
1Q21
chr1:144488706-144674781
ALT
1
0
0
ABO
chr9:133174055-133504070
FIX
1
0
0
ABR
chr17:960754-1449331
ALT
2
0
0
ADAM5
chr8:39094318-39873856
ALT
1
0
0
APOBEC
chr22:38884294-39011160
ALT
1
0
0
APOL5
chr22:35685234-35942668
ALT
1
0
0
B3GNTL1
chr17:82922720-83103577
ALT
1
0
0
BAGE5
chr13:18171249-18358106
FIX
1
0
0
C1R
chr12:7071546-7264845
FIX
1
0
0
CASP8AP2
chr6:89804656-89941739
FIX
1
0
0
CCL5_TBC1D3
chr17:35765469-38841755
ALT
2
0
0
CEACAM_REGION_1
chr19:41456581-41682000
ALT
1
0
0
CT47_REGION
chrX:120599933-121083725
FIX
1
0
0
CTIF
chr18:48514982-48918117
FIX
1
0
0
CTRB1_CTRB2
chr16:75169811-75248387
NOVEL
1
0
0
CYP2D6
chr22:42077656-42253758
ALT, NOVEL
8
0
0
DEFENSIN_REGION_1
chr8:6604731-13171905
ALT, FIX
2
0
0
DOC2B_RPH3AL
chr17:60001-402637
ALT
2
0
0
ECSCR
chr5:139409472-139500161
FIX
1
0
0
ELANE
chr19:821158-881412
ALT
1
0
0
FCGBP
chr19:39740125-40095774
FIX
1
0
0
FOXO6
chr1:41250328-41436604
FIX
1
0
0
FRA16A
chr16:16998740-17478916
FIX
1
0
0
GALNT9
chr12:132092972-132391208
FIX
1
0
0
GCNT2
chr6:10489117-10731912
FIX
1
0
0
GPI
chr19:34350807-34392977
ALT
1
0
0
GUSBP1
chr5:21448370-21713081
NOVEL
1
0
0
IGH
chr14:92885439-94394539
ALT
1
0
0
IGK
chr2:88891175-89330679
FIX
1
0
0
IGL
chr22:22373449-22624257
ALT
1
0
0
KRTAP_REGION_1
chr17:40850733-41432935
ALT
4
0
0
KRTAP_REGION_2
chr11:1523474-1740879
ALT
2
0
0
LPPR1
chr9:100948798-101378291
ALT
1
0
0
LRC_KIR
chr19:54025634-55084318
ALT, NOVEL
50
17
0
MAMDC2
chr9:70024113-70189318
ALT
1
0
0
MAPT
chr17:45309498-46903773
ALT
2
1
0
MCTP1
chr5:95169857-95254491
ALT
1
0
0
MEGF11
chr15:65908183-66284818
ALT
1
0
0
MHC
chr6:28510120-33480577
ALT
8
98
0
MTX1
chr1:155210382-155305245
ALT
1
0
0
MUCIN_REGION_1
chr11:937258-1207515
ALT, FIX
3
0
0
MUCIN_REGION_2
chr3:195629504-195827492
ALT
7
0
0
NOR_CHR_13
chr13:15590088-16000000
FIX
1
0
0
NOR_CHR_14
chr14:15600817-16000000
FIX
1
0
0
NOR_CHR_15
chr15:16603485-17000000
FIX
1
0
0
NOR_CHR_21
chr21:8310972-8472360
FIX
1
0
0
NOR_CHR_22
chr22:10097632-10510000
FIX
1
0
0
OLFACTORY_REGION_1
chr11:56189252-56873567
ALT
2
0
0
OLFACTORY_REGION_2
chr11:7779133-7972558
ALT, NOVEL
2
0
0
OLFACTORY_REGION_3
chr1:248352027-248511794
ALT
2
0
0
OLFACTORY_REGION_4
chr11:49958373-50099251
FIX
1
0
0
OVOS2
chr12:31111480-31347345
ALT
1
0
0
PAM16
chr16:4299637-4530534
ALT
1
0
0
POLR2A
chr17:7379544-7534268
FIX
1
0
0
PPFIA1
chr11:70244180-70455787
FIX
1
0
0
PRADER_WILLI
chr15:19775255-24552710
ALT, FIX
5
0
0
PRAME_REGION_1
chr1:12818488-13312803
ALT, FIX, NOVEL
3
0
0
PRH1_PRR4
chr12:10801295-11377386
ALT
3
0
0
PTEN
chr10:87784179-88048756
FIX
1
0
0
RAB11FIP3
chr16:400855-531525
ALT
1
0
0
REGION10
chr6:79350008-79446911
ALT
1
0
0
REGION104
chr11:470360-678681
ALT
1
0
0
REGION105
chr11:2767814-3065846
ALT
1
0
0
REGION106
chr11:69165291-69229344
ALT
1
0
0
REGION107
chr11:134773600-134962792
ALT
1
0
0
REGION108
chr1:2448811-2791270
ALT
1
1
0
REGION109
chr1:30352191-30456601
ALT
1
0
0
REGION11
chr7:141633409-141746583
ALT
1
0
0
REGION110
chr1:234163457-234211370
ALT
1
0
0
REGION111
chr1:242987893-243895211
ALT
1
0
0
REGION112
chr1:245305697-245727576
ALT
1
0
0
REGION113
chr2:728878-860300
ALT
1
0
0
REGION114
chr2:1204935-1273724
ALT
1
0
0
REGION115
chr2:1315177-1541254
ALT
1
0
0
REGION116
chr2:90218337-90402511
ALT
2
0
0
REGION117
chr2:115908855-116040717
ALT
1
0
0
REGION118
chr2:116874515-116981849
ALT
1
0
0
REGION119
chr2:131697037-131806107
ALT
1
0
0
REGION120
chr2:241787903-242117508
ALT
3
0
0
REGION121
chr2:3391898-3511146
ALT
1
0
0
REGION122
chr3:20277967-20382602
ALT
1
0
0
REGION123
chr3:125665519-125883802
ALT
1
0
0
REGION124
chr3:154111571-154282042
ALT
1
0
0
REGION125
chr3:166300784-166544173
ALT
1
0
0
REGION126
chr3:184425340-184533338
ALT
1
0
0
REGION127
chr3:197397856-197558882
ALT
1
0
0
REGION128
chr3:198047549-198235559
ALT
1
0
0
REGION129
chr4:21521367-21734410
ALT
1
0
0
REGION13
chr9:69413743-69477097
ALT
1
0
0
REGION130
chr4:55678095-55785754
ALT
1
0
0
REGION131
chr4:120164199-120317014
ALT
1
0
0
REGION132
chr4:186920392-187048061
ALT
1
0
0
REGION133
chr4:188341423-188542359
ALT
1
0
0
REGION134
chr4:189361858-190204555
ALT, FIX, NOVEL
5
0
0
REGION135
chr5:502435-626896
ALT
1
0
0
REGION136
chr5:33800665-33963236
ALT
1
0
0
REGION137
chr5:125279466-125444151
ALT
1
0
0
REGION138
chr5:177865465-177996111
ALT
2
0
0
REGION139
chr6:65774814-65944033
ALT
1
0
0
REGION14
chr9:7428994-7577169
ALT
1
0
0
REGION140
chr6:68262879-68402208
ALT
1
0
0
REGION141
chr6:127654803-128521146
ALT
1
0
0
REGION142
chr6:166220580-166285980
ALT
1
0
0
REGION143
chr6:169724799-169919706
ALT
1
0
0
REGION144
chr6:170272763-170535221
ALT
1
0
0
REGION145
chr7:10001-279542
ALT, FIX
3
0
0
REGION146
chr7:76500982-76722751
ALT
1
0
0
REGION147
chr7:103086563-103242097
ALT
1
0
0
REGION148
chr7:148214874-148487860
ALT
1
0
0
REGION149
chr7:157697532-157820586
ALT
1
0
0
REGION15
chr9:88179047-88227980
ALT
1
0
0
REGION150
chr7:158267495-158477174
ALT
1
0
0
REGION151
chr8:718410-2817440
ALT
7
0
0
REGION152
chr8:57173351-57303398
ALT
1
0
0
REGION153
chr8:128554723-128925740
ALT
1
0
0
REGION154
chr8:141333447-141461079
ALT
1
0
0
REGION155
chr8:141766834-141800272
ALT
1
0
0
REGION156
chr8:143009713-143163398
ALT
1
0
0
REGION157
chr8:143509961-143828794
ALT
1
0
0
REGION158
chr8:144628750-144757761
ALT
1
0
0
REGION159
chr10:42103240-42298939
ALT
1
0
0
REGION16
chr10:27285655-27417608
ALT
1
0
0
REGION160
chr10:77761309-77931226
ALT
1
0
0
REGION161
chr12:123826509-123945954
ALT
1
0
0
REGION162
chr12:130323076-130394967
ALT
1
0
0
REGION163
chr12:131543020-131584984
ALT
1
0
0
REGION164
chr13:18698351-18884136
ALT
1
0
0
REGION165
chr13:25652362-25828680
ALT
1
0
0
REGION166
chr13:70341886-70442876
ALT
1
0
0
REGION167
chr13:89598964-89764093
ALT
1
0
0
REGION168
chr13:112182875-112505943
ALT
1
0
0
REGION169
chr13:113649178-113763795
ALT, FIX
2
0
0
REGION170
chr14:91535865-91854371
ALT
1
0
0
REGION171
chr14:105533003-106860219
ALT
1
0
0
REGION172
chr15:82289984-82641774
ALT
1
0
0
REGION173
chr16:1871895-1933852
ALT
1
0
0
REGION174
chr16:14427144-16998739
ALT
1
0
0
REGION175
chr17:71584518-71819311
ALT
1
0
0
REGION176
chr17:72833331-72935743
ALT, NOVEL
2
0
0
REGION177
chr18:43667277-43773892
ALT
1
0
0
REGION178
chr18:79563122-79725366
ALT
1
0
0
REGION179
chr20:61886306-62008187
ALT
1
0
0
REGION18
chr10:45175233-45468971
ALT
1
0
0
REGION180
chr20:64095055-64274842
ALT
1
0
0
REGION181
chr20:63414721-63471095
ALT
1
0
0
REGION182
chr21:17146893-17310433
ALT
1
0
0
REGION183
chr21:17603695-17744061
ALT
1
0
0
REGION184
chr22:23354043-23516062
ALT
1
0
0
REGION185
chr22:23763639-24013509
ALT
1
0
0
REGION186
chr22:36779214-36877704
ALT
1
0
0
REGION187
chrX:319338-601516
ALT
2
0
0
REGION188
chrX:79965154-80097082
ALT
1
0
0
REGION189
chr1:26512383-26678582
FIX
1
0
0
REGION19
chr11:25170407-25319080
ALT
1
0
0
REGION190
chr1:112909422-113029606
FIX
1
0
0
REGION191
chr3:91247723-91553319
FIX
1
5
0
REGION192
chr3:44474647-44925818
FIX
1
0
0
REGION193
chr5:21098347-21230960
NOVEL
1
0
0
REGION194
chr6:67533466-67796090
FIX
1
0
0
REGION195
chr10:74797382-75073121
FIX
1
0
0
REGION196
chr12:17717409-17928910
FIX
1
0
0
REGION197
chr13:86200738-86292877
FIX
2
0
0
REGION198
chrY:56821510-56887902
FIX
1
0
0
REGION199
chr1:210220259-210677001
FIX
1
0
0
REGION2
chr1:153700531-153865738
ALT
1
0
0
REGION20
chr12:126227198-126405474
ALT
1
0
0
REGION200
chr1:17157487-17460319
FIX
1
0
0
REGION201
chr2:233054663-233420161
FIX
1
0
0
REGION202
chr2:239696904-239905046
FIX
1
0
0
REGION203
chr10:131588434-131607480
FIX
1
0
0
REGION204
chr10:124109957-124195365
FIX
1
0
0
REGION205
chr10:38918270-39338430
FIX
1
0
0
REGION206
chr12:12031003-12572035
FIX
1
0
0
REGION207
chr12:122057735-122145576
FIX
1
0
0
REGION208
chr13:100900735-101049613
FIX
1
0
0
REGION209
chr13:113936976-114147229
FIX
1
0
0
REGION21
chr12:27996034-28110778
ALT
1
0
0
REGION210
chr3:90528825-90699772
FIX
1
0
0
REGION211
chr6:61123605-61470683
FIX
1
0
0
REGION212
chr7:154422352-154602937
FIX
1
0
0
REGION213
chr16:75930096-76091406
NOVEL
1
0
0
REGION214
chr6:82140389-82375901
FIX
1
0
0
REGION215
chr11:92232311-92410192
FIX
1
0
0
REGION216
chr10:65503225-65684914
NOVEL
1
0
0
REGION217
chr12:1033530-1135924
NOVEL
1
0
0
REGION218
chr13:84294441-84452423
NOVEL
1
0
0
REGION219
chr13:108604134-108722945
NOVEL
1
0
0
REGION22
chr12:57932737-58092755
ALT
1
0
0
REGION220
chr16:71137292-71399966
NOVEL
1
0
0
REGION221
chr16:2820536-2873621
NOVEL
1
0
0
REGION222
chr4:14931450-15019028
NOVEL
1
0
0
REGION223
chr4:65880454-66040277
NOVEL
1
0
0
REGION224
chr4:69959865-70191926
NOVEL
1
0
0
REGION225
chr6:13101650-13179113
NOVEL
1
0
0
REGION226
chr9:8983671-9142737
NOVEL
1
0
0
REGION227
chr9:24949709-25079413
NOVEL
1
0
0
REGION228
chr1:23237486-23579959
NOVEL
1
0
0
REGION229
chr1:103909381-104045121
NOVEL
1
0
0
REGION23
chr12:58929265-59060870
ALT
1
0
0
REGION230
chr18:22388680-22588100
NOVEL
1
0
0
REGION231
chr19:38590365-38995717
FIX
1
0
0
REGION232
chr12:86768210-87083988
FIX
1
0
0
REGION233
chr2:205890983-206421450
NOVEL
1
0
0
REGION234
chr5:179235294-179907499
FIX
1
0
0
REGION235
chr3:16687511-17099186
FIX
1
0
0
REGION236
chr4:154079465-154493046
NOVEL
1
0
0
REGION237
chr17:52434177-52673566
NOVEL
1
0
0
REGION238
chr17:18239627-18506313
NOVEL
1
0
0
REGION239
chrX:4950957-5129468
NOVEL
1
0
0
REGION24
chr12:101111599-101258295
ALT
1
0
0
REGION240
chr1:107987825-108539424
NOVEL
1
0
0
REGION241
chr7:99092372-99228806
FIX
1
0
0
REGION242
chr7:107154479-107622612
FIX
1
0
0
REGION243
chr8:21395510-21659610
FIX
1
0
0
REGION244
chr8:57022151-57173350
FIX
1
0
0
REGION245
chr16:21176310-22760988
FIX
1
0
0
REGION246
chr1:28206357-28366763
NOVEL
1
0
0
REGION247
chr1:72287734-72419130
NOVEL
1
0
0
REGION248
chr2:126189128-126361783
NOVEL
1
0
0
REGION249
chr2:208007848-208142067
NOVEL
1
0
0
REGION25
chr15:27865714-32946929
ALT, NOVEL
3
5
0
REGION250
chr3:84799968-84960626
NOVEL
1
0
0
REGION251
chr5:3768476-3899281
NOVEL
1
0
0
REGION252
chr7:143380637-144630931
FIX, NOVEL
2
0
0
REGION253
chr12:1657857-2698722
FIX
1
0
0
REGION254
chr12:121594225-121658918
FIX
1
0
0
REGION255
chr12:86094144-86261655
NOVEL
1
0
0
REGION256
chr14:23699022-24389954
FIX
1
0
0
REGION257
chr14:63664049-63829157
NOVEL
1
0
0
REGION258
chr18:70423088-70510260
FIX
1
0
0
REGION259
chrY:9034110-9132718
FIX
1
0
0
REGION26
chr16:55772981-55968548
ALT
1
0
0
REGION260
chrY:21578942-21828659
FIX
1
0
0
REGION261
chr1:29545040-29590578
FIX
1
0
0
REGION262
chr3:94896163-94997637
FIX
1
0
0
REGION263
chr3:112116711-112302325
NOVEL
1
0
0
REGION264
chr3:128137812-128433766
NOVEL
1
0
0
REGION265
chr3:175333210-175524240
NOVEL
1
0
0
REGION266
chr3:176115490-176274065
NOVEL
1
0
0
REGION267
chr7:9026358-9192359
NOVEL
1
0
0
REGION268
chr8:129724678-129818699
NOVEL
1
0
0
REGION269
chr11:47572175-47847277
FIX
1
0
0
REGION270
chr11:49535823-49841095
FIX
1
0
0
REGION271
chr11:59910346-60087289
NOVEL
1
0
0
REGION272
chr11:90093878-90364703
NOVEL
1
0
0
REGION273
chr12:127053477-127193247
NOVEL
1
0
0
REGION274
chr18:1744182-1884837
NOVEL
1
0
0
REGION275
chr2:16105575-16187687
FIX
1
0
0
REGION276
chr2:238772758-238918045
FIX
1
0
0
REGION277
chr3:75363639-75568796
NOVEL
1
0
0
REGION278
chr4:32810823-32942229
FIX
1
0
0
REGION279
chr4:8728948-8923891
FIX
1
0
0
REGION28
chr17:70306278-70524219
ALT
1
0
0
REGION280
chr4:31788957-31855391
FIX
1
0
0
REGION281
chr4:49074722-49336924
FIX
1
0
0
REGION282
chr4:1421767-1660835
FIX
1
0
0
REGION283
chr4:58666869-58984981
FIX
1
0
0
REGION284
chr6:95012984-95133130
FIX
1
0
0
REGION285
chr9:134176072-134201322
FIX
1
0
0
REGION286
chr11:87928891-88117772
FIX
1
0
0
REGION287
chr11:96542549-96587148
FIX
1
0
0
REGION288
chr11:18251175-18419476
FIX
1
0
0
REGION289
chr13:111786909-111851680
FIX
1
0
0
REGION290
chr10:38363173-38781896
FIX
1
0
0
REGION291
chr14:46309691-46567274
NOVEL
1
0
0
REGION292
chr22:16124788-16489297
FIX
1
0
0
REGION293
chr22:49970785-49983074
FIX
1
0
0
REGION294
chrX:37081326-37291004
FIX
1
0
0
REGION295
chrX:50213756-50288885
FIX
1
0
0
REGION296
chrX:114255137-114367567
FIX
1
0
0
REGION297
chrX:144422134-144483176
FIX
1
0
0
REGION298
chr10:47739150-48074662
FIX
1
0
0
REGION299
chr15:74172576-74539995
FIX
1
0
0
REGION3
chr1:198370083-198725175
ALT
1
0
0
REGION30
chr17:77220730-77299326
ALT
1
0
0
REGION300
chr17:7244673-7379543
FIX
1
0
0
REGION301
chr17:81736740-81843202
FIX
1
0
0
REGION302
chr11:1809498-2077600
FIX
1
0
0
REGION303
chr15:101893864-101981189
FIX
1
0
0
REGION31
chr18:50292194-50574792
ALT
1
0
0
REGION32
chr18:51662936-51821642
ALT
1
0
0
REGION33
chr18:67423723-67552551
ALT
1
1
0
REGION34
chr18:72933122-73024781
ALT
1
0
0
REGION35
chr18:78493467-78664469
ALT
2
0
0
REGION36
chr18:78934886-79088997
ALT
2
0
0
REGION37
chr19:21648290-21809032
ALT
1
0
0
REGION38
chr19:34152260-34300950
ALT
1
0
0
REGION39
chr19:22120850-22300666
ALT
1
0
0
REGION4
chr2:36225959-36363315
ALT
1
0
0
REGION40
chr20:17771102-17893471
ALT
1
0
0
REGION41
chr21:14424141-14475471
ALT
1
0
0
REGION42
chr21:22102474-22296968
ALT
1
0
0
REGION43
chr21:32769079-32837937
ALT
1
0
0
REGION44
chr2:148934069-149024119
ALT
1
0
0
REGION5
chr3:151589366-151759498
ALT
1
0
0
REGION50
chr12:10001-173298
ALT
1
0
0
REGION6
chr4:34517955-34883858
ALT
1
0
0
REGION61
chr5:29036498-29254469
ALT
1
0
0
REGION7
chr4:155835378-155987264
ALT
1
0
0
REGION73
chr3:11815268-11986497
ALT
1
0
0
REGION8
chr5:162373667-162541648
ALT
1
0
0
REGION9
chr5:12681426-12744010
ALT
1
0
0
REGION99
chr6:168796076-168951646
ALT
1
0
0
RFLNB
chr17:402638-722442
FIX
1
0
0
RNA5S_REGION_1
chr1:228408802-228753027
FIX
1
0
0
RYBP
chr3:72325441-72740399
FIX
1
0
0
SAMD1
chr19:13788160-14281006
FIX
1
0
0
SBNO2
chr19:1107414-1158195
ALT
1
0
0
SERPIN_REGION_1
chr14:104449322-104622880
ALT
1
0
0
SHANK3
chr22:50663907-50764925
FIX
1
0
0
SLC12A7
chr5:981494-1161361
ALT
1
0
0
SLC14A2_AS1
chr18:45379886-45610729
FIX
1
0
0
SLC25A26
chr3:66023201-66396803
FIX
1
0
0
SLC37A4
chr11:118978401-119087276
FIX
1
0
0
SLC39A4
chr8:144269398-144434518
FIX
1
0
0
SLC5A11
chr16:24749301-25017484
FIX
1
0
0
SLC6A3
chr5:1318299-1509772
ALT
1
0
0
SMA
chr5:69216819-71614443
ALT
2
2
0
SNTB2
chr16:69140151-69224690
ALT
1
0
0
SPATC1L
chr21:46140942-46221322
ALT
1
0
0
SPC25
chr2:168830363-168937194
ALT
1
0
0
TBCE
chr1:235360200-235568613
NOVEL
1
0
0
TMEM50B
chr21:33405429-33512559
ALT
1
0
0
TRB
chr7:142038121-143088503
ALT
1
0
0
TRIM69
chr15:44676664-44913053
ALT
1
0
0
UGT2B17
chr4:68306359-69010457
ALT
1
0
0
WDR81
chr17:1569973-1767739
ALT
1
0
0
ZNF66
chr19:20663141-21042381
ALT
1
0
0
Scaffold counts.
Chromosome
All scaffolds
Placed scaffolds
Unplaced scaffolds
1
21
12
9
2
9
7
2
3
7
6
1
4
10
9
1
5
18
17
1
6
3
3
0
7
6
6
0
8
6
6
0
9
25
21
4
10
6
6
0
11
7
6
1
12
9
9
0
13
18
18
0
14
25
17
8
15
8
7
1
16
10
9
1
17
13
10
3
18
12
12
0
19
7
7
0
20
18
18
0
21
40
40
0
22
45
36
9
X
9
9
0
Y
14
13
1
Un
127
na
127
Genome
473
304
169
Region
Location
Sequence types
Scaffold length
1Q21
chr1:144488706-144674781
ALT
1
ABO
chr9:133174055-133504070
FIX
1
ABR
chr17:960754-1449331
ALT
2
ADAM5
chr8:39094318-39873856
ALT
1
APOBEC
chr22:38884294-39011160
ALT
1
APOL5
chr22:35685234-35942668
ALT
1
B3GNTL1
chr17:82922720-83103577
ALT
1
BAGE5
chr13:18171249-18358106
FIX
1
C1R
chr12:7071546-7264845
FIX
1
CASP8AP2
chr6:89804656-89941739
FIX
1
CCL5_TBC1D3
chr17:35765469-38841755
ALT
2
CEACAM_REGION_1
chr19:41456581-41682000
ALT
1
CT47_REGION
chrX:120599933-121083725
FIX
1
CTIF
chr18:48514982-48918117
FIX
1
CTRB1_CTRB2
chr16:75169811-75248387
NOVEL
1
CYP2D6
chr22:42077656-42253758
ALT, NOVEL
8
DEFENSIN_REGION_1
chr8:6604731-13171905
ALT, FIX
2
DOC2B_RPH3AL
chr17:60001-402637
ALT
2
ECSCR
chr5:139409472-139500161
FIX
1
ELANE
chr19:821158-881412
ALT
1
FCGBP
chr19:39740125-40095774
FIX
1
FOXO6
chr1:41250328-41436604
FIX
1
FRA16A
chr16:16998740-17478916
FIX
1
GALNT9
chr12:132092972-132391208
FIX
1
GCNT2
chr6:10489117-10731912
FIX
1
GPI
chr19:34350807-34392977
ALT
1
GUSBP1
chr5:21448370-21713081
NOVEL
1
IGH
chr14:92885439-94394539
ALT
1
IGK
chr2:88891175-89330679
FIX
1
IGL
chr22:22373449-22624257
ALT
1
KRTAP_REGION_1
chr17:40850733-41432935
ALT
4
KRTAP_REGION_2
chr11:1523474-1740879
ALT
2
LPPR1
chr9:100948798-101378291
ALT
1
LRC_KIR
chr19:54025634-55084318
ALT, NOVEL
50
MAMDC2
chr9:70024113-70189318
ALT
1
MAPT
chr17:45309498-46903773
ALT
2
MCTP1
chr5:95169857-95254491
ALT
1
MEGF11
chr15:65908183-66284818
ALT
1
MHC
chr6:28510120-33480577
ALT
8
MTX1
chr1:155210382-155305245
ALT
1
MUCIN_REGION_1
chr11:937258-1207515
ALT, FIX
3
MUCIN_REGION_2
chr3:195629504-195827492
ALT
7
NOR_CHR_13
chr13:15590088-16000000
FIX
1
NOR_CHR_14
chr14:15600817-16000000
FIX
1
NOR_CHR_15
chr15:16603485-17000000
FIX
1
NOR_CHR_21
chr21:8310972-8472360
FIX
1
NOR_CHR_22
chr22:10097632-10510000
FIX
1
OLFACTORY_REGION_1
chr11:56189252-56873567
ALT
2
OLFACTORY_REGION_2
chr11:7779133-7972558
ALT, NOVEL
2
OLFACTORY_REGION_3
chr1:248352027-248511794
ALT
2
OLFACTORY_REGION_4
chr11:49958373-50099251
FIX
1
OVOS2
chr12:31111480-31347345
ALT
1
PAM16
chr16:4299637-4530534
ALT
1
POLR2A
chr17:7379544-7534268
FIX
1
PPFIA1
chr11:70244180-70455787
FIX
1
PRADER_WILLI
chr15:19775255-24552710
ALT, FIX
5
PRAME_REGION_1
chr1:12818488-13312803
ALT, FIX, NOVEL
3
PRH1_PRR4
chr12:10801295-11377386
ALT
3
PTEN
chr10:87784179-88048756
FIX
1
RAB11FIP3
chr16:400855-531525
ALT
1
REGION10
chr6:79350008-79446911
ALT
1
REGION104
chr11:470360-678681
ALT
1
REGION105
chr11:2767814-3065846
ALT
1
REGION106
chr11:69165291-69229344
ALT
1
REGION107
chr11:134773600-134962792
ALT
1
REGION108
chr1:2448811-2791270
ALT
1
REGION109
chr1:30352191-30456601
ALT
1
REGION11
chr7:141633409-141746583
ALT
1
REGION110
chr1:234163457-234211370
ALT
1
REGION111
chr1:242987893-243895211
ALT
1
REGION112
chr1:245305697-245727576
ALT
1
REGION113
chr2:728878-860300
ALT
1
REGION114
chr2:1204935-1273724
ALT
1
REGION115
chr2:1315177-1541254
ALT
1
REGION116
chr2:90218337-90402511
ALT
2
REGION117
chr2:115908855-116040717
ALT
1
REGION118
chr2:116874515-116981849
ALT
1
REGION119
chr2:131697037-131806107
ALT
1
REGION120
chr2:241787903-242117508
ALT
3
REGION121
chr2:3391898-3511146
ALT
1
REGION122
chr3:20277967-20382602
ALT
1
REGION123
chr3:125665519-125883802
ALT
1
REGION124
chr3:154111571-154282042
ALT
1
REGION125
chr3:166300784-166544173
ALT
1
REGION126
chr3:184425340-184533338
ALT
1
REGION127
chr3:197397856-197558882
ALT
1
REGION128
chr3:198047549-198235559
ALT
1
REGION129
chr4:21521367-21734410
ALT
1
REGION13
chr9:69413743-69477097
ALT
1
REGION130
chr4:55678095-55785754
ALT
1
REGION131
chr4:120164199-120317014
ALT
1
REGION132
chr4:186920392-187048061
ALT
1
REGION133
chr4:188341423-188542359
ALT
1
REGION134
chr4:189361858-190204555
ALT, FIX, NOVEL
5
REGION135
chr5:502435-626896
ALT
1
REGION136
chr5:33800665-33963236
ALT
1
REGION137
chr5:125279466-125444151
ALT
1
REGION138
chr5:177865465-177996111
ALT
2
REGION139
chr6:65774814-65944033
ALT
1
REGION14
chr9:7428994-7577169
ALT
1
REGION140
chr6:68262879-68402208
ALT
1
REGION141
chr6:127654803-128521146
ALT
1
REGION142
chr6:166220580-166285980
ALT
1
REGION143
chr6:169724799-169919706
ALT
1
REGION144
chr6:170272763-170535221
ALT
1
REGION145
chr7:10001-279542
ALT, FIX
3
REGION146
chr7:76500982-76722751
ALT
1
REGION147
chr7:103086563-103242097
ALT
1
REGION148
chr7:148214874-148487860
ALT
1
REGION149
chr7:157697532-157820586
ALT
1
REGION15
chr9:88179047-88227980
ALT
1
REGION150
chr7:158267495-158477174
ALT
1
REGION151
chr8:718410-2817440
ALT
7
REGION152
chr8:57173351-57303398
ALT
1
REGION153
chr8:128554723-128925740
ALT
1
REGION154
chr8:141333447-141461079
ALT
1
REGION155
chr8:141766834-141800272
ALT
1
REGION156
chr8:143009713-143163398
ALT
1
REGION157
chr8:143509961-143828794
ALT
1
REGION158
chr8:144628750-144757761
ALT
1
REGION159
chr10:42103240-42298939
ALT
1
REGION16
chr10:27285655-27417608
ALT
1
REGION160
chr10:77761309-77931226
ALT
1
REGION161
chr12:123826509-123945954
ALT
1
REGION162
chr12:130323076-130394967
ALT
1
REGION163
chr12:131543020-131584984
ALT
1
REGION164
chr13:18698351-18884136
ALT
1
REGION165
chr13:25652362-25828680
ALT
1
REGION166
chr13:70341886-70442876
ALT
1
REGION167
chr13:89598964-89764093
ALT
1
REGION168
chr13:112182875-112505943
ALT
1
REGION169
chr13:113649178-113763795
ALT, FIX
2
REGION170
chr14:91535865-91854371
ALT
1
REGION171
chr14:105533003-106860219
ALT
1
REGION172
chr15:82289984-82641774
ALT
1
REGION173
chr16:1871895-1933852
ALT
1
REGION174
chr16:14427144-16998739
ALT
1
REGION175
chr17:71584518-71819311
ALT
1
REGION176
chr17:72833331-72935743
ALT, NOVEL
2
REGION177
chr18:43667277-43773892
ALT
1
REGION178
chr18:79563122-79725366
ALT
1
REGION179
chr20:61886306-62008187
ALT
1
REGION18
chr10:45175233-45468971
ALT
1
REGION180
chr20:64095055-64274842
ALT
1
REGION181
chr20:63414721-63471095
ALT
1
REGION182
chr21:17146893-17310433
ALT
1
REGION183
chr21:17603695-17744061
ALT
1
REGION184
chr22:23354043-23516062
ALT
1
REGION185
chr22:23763639-24013509
ALT
1
REGION186
chr22:36779214-36877704
ALT
1
REGION187
chrX:319338-601516
ALT
2
REGION188
chrX:79965154-80097082
ALT
1
REGION189
chr1:26512383-26678582
FIX
1
REGION19
chr11:25170407-25319080
ALT
1
REGION190
chr1:112909422-113029606
FIX
1
REGION191
chr3:91247723-91553319
FIX
1
REGION192
chr3:44474647-44925818
FIX
1
REGION193
chr5:21098347-21230960
NOVEL
1
REGION194
chr6:67533466-67796090
FIX
1
REGION195
chr10:74797382-75073121
FIX
1
REGION196
chr12:17717409-17928910
FIX
1
REGION197
chr13:86200738-86292877
FIX
2
REGION198
chrY:56821510-56887902
FIX
1
REGION199
chr1:210220259-210677001
FIX
1
REGION2
chr1:153700531-153865738
ALT
1
REGION20
chr12:126227198-126405474
ALT
1
REGION200
chr1:17157487-17460319
FIX
1
REGION201
chr2:233054663-233420161
FIX
1
REGION202
chr2:239696904-239905046
FIX
1
REGION203
chr10:131588434-131607480
FIX
1
REGION204
chr10:124109957-124195365
FIX
1
REGION205
chr10:38918270-39338430
FIX
1
REGION206
chr12:12031003-12572035
FIX
1
REGION207
chr12:122057735-122145576
FIX
1
REGION208
chr13:100900735-101049613
FIX
1
REGION209
chr13:113936976-114147229
FIX
1
REGION21
chr12:27996034-28110778
ALT
1
REGION210
chr3:90528825-90699772
FIX
1
REGION211
chr6:61123605-61470683
FIX
1
REGION212
chr7:154422352-154602937
FIX
1
REGION213
chr16:75930096-76091406
NOVEL
1
REGION214
chr6:82140389-82375901
FIX
1
REGION215
chr11:92232311-92410192
FIX
1
REGION216
chr10:65503225-65684914
NOVEL
1
REGION217
chr12:1033530-1135924
NOVEL
1
REGION218
chr13:84294441-84452423
NOVEL
1
REGION219
chr13:108604134-108722945
NOVEL
1
REGION22
chr12:57932737-58092755
ALT
1
REGION220
chr16:71137292-71399966
NOVEL
1
REGION221
chr16:2820536-2873621
NOVEL
1
REGION222
chr4:14931450-15019028
NOVEL
1
REGION223
chr4:65880454-66040277
NOVEL
1
REGION224
chr4:69959865-70191926
NOVEL
1
REGION225
chr6:13101650-13179113
NOVEL
1
REGION226
chr9:8983671-9142737
NOVEL
1
REGION227
chr9:24949709-25079413
NOVEL
1
REGION228
chr1:23237486-23579959
NOVEL
1
REGION229
chr1:103909381-104045121
NOVEL
1
REGION23
chr12:58929265-59060870
ALT
1
REGION230
chr18:22388680-22588100
NOVEL
1
REGION231
chr19:38590365-38995717
FIX
1
REGION232
chr12:86768210-87083988
FIX
1
REGION233
chr2:205890983-206421450
NOVEL
1
REGION234
chr5:179235294-179907499
FIX
1
REGION235
chr3:16687511-17099186
FIX
1
REGION236
chr4:154079465-154493046
NOVEL
1
REGION237
chr17:52434177-52673566
NOVEL
1
REGION238
chr17:18239627-18506313
NOVEL
1
REGION239
chrX:4950957-5129468
NOVEL
1
REGION24
chr12:101111599-101258295
ALT
1
REGION240
chr1:107987825-108539424
NOVEL
1
REGION241
chr7:99092372-99228806
FIX
1
REGION242
chr7:107154479-107622612
FIX
1
REGION243
chr8:21395510-21659610
FIX
1
REGION244
chr8:57022151-57173350
FIX
1
REGION245
chr16:21176310-22760988
FIX
1
REGION246
chr1:28206357-28366763
NOVEL
1
REGION247
chr1:72287734-72419130
NOVEL
1
REGION248
chr2:126189128-126361783
NOVEL
1
REGION249
chr2:208007848-208142067
NOVEL
1
REGION25
chr15:27865714-32946929
ALT, NOVEL
3
REGION250
chr3:84799968-84960626
NOVEL
1
REGION251
chr5:3768476-3899281
NOVEL
1
REGION252
chr7:143380637-144630931
FIX, NOVEL
2
REGION253
chr12:1657857-2698722
FIX
1
REGION254
chr12:121594225-121658918
FIX
1
REGION255
chr12:86094144-86261655
NOVEL
1
REGION256
chr14:23699022-24389954
FIX
1
REGION257
chr14:63664049-63829157
NOVEL
1
REGION258
chr18:70423088-70510260
FIX
1
REGION259
chrY:9034110-9132718
FIX
1
REGION26
chr16:55772981-55968548
ALT
1
REGION260
chrY:21578942-21828659
FIX
1
REGION261
chr1:29545040-29590578
FIX
1
REGION262
chr3:94896163-94997637
FIX
1
REGION263
chr3:112116711-112302325
NOVEL
1
REGION264
chr3:128137812-128433766
NOVEL
1
REGION265
chr3:175333210-175524240
NOVEL
1
REGION266
chr3:176115490-176274065
NOVEL
1
REGION267
chr7:9026358-9192359
NOVEL
1
REGION268
chr8:129724678-129818699
NOVEL
1
REGION269
chr11:47572175-47847277
FIX
1
REGION270
chr11:49535823-49841095
FIX
1
REGION271
chr11:59910346-60087289
NOVEL
1
REGION272
chr11:90093878-90364703
NOVEL
1
REGION273
chr12:127053477-127193247
NOVEL
1
REGION274
chr18:1744182-1884837
NOVEL
1
REGION275
chr2:16105575-16187687
FIX
1
REGION276
chr2:238772758-238918045
FIX
1
REGION277
chr3:75363639-75568796
NOVEL
1
REGION278
chr4:32810823-32942229
FIX
1
REGION279
chr4:8728948-8923891
FIX
1
REGION28
chr17:70306278-70524219
ALT
1
REGION280
chr4:31788957-31855391
FIX
1
REGION281
chr4:49074722-49336924
FIX
1
REGION282
chr4:1421767-1660835
FIX
1
REGION283
chr4:58666869-58984981
FIX
1
REGION284
chr6:95012984-95133130
FIX
1
REGION285
chr9:134176072-134201322
FIX
1
REGION286
chr11:87928891-88117772
FIX
1
REGION287
chr11:96542549-96587148
FIX
1
REGION288
chr11:18251175-18419476
FIX
1
REGION289
chr13:111786909-111851680
FIX
1
REGION290
chr10:38363173-38781896
FIX
1
REGION291
chr14:46309691-46567274
NOVEL
1
REGION292
chr22:16124788-16489297
FIX
1
REGION293
chr22:49970785-49983074
FIX
1
REGION294
chrX:37081326-37291004
FIX
1
REGION295
chrX:50213756-50288885
FIX
1
REGION296
chrX:114255137-114367567
FIX
1
REGION297
chrX:144422134-144483176
FIX
1
REGION298
chr10:47739150-48074662
FIX
1
REGION299
chr15:74172576-74539995
FIX
1
REGION3
chr1:198370083-198725175
ALT
1
REGION30
chr17:77220730-77299326
ALT
1
REGION300
chr17:7244673-7379543
FIX
1
REGION301
chr17:81736740-81843202
FIX
1
REGION302
chr11:1809498-2077600
FIX
1
REGION303
chr15:101893864-101981189
FIX
1
REGION31
chr18:50292194-50574792
ALT
1
REGION32
chr18:51662936-51821642
ALT
1
REGION33
chr18:67423723-67552551
ALT
1
REGION34
chr18:72933122-73024781
ALT
1
REGION35
chr18:78493467-78664469
ALT
2
REGION36
chr18:78934886-79088997
ALT
2
REGION37
chr19:21648290-21809032
ALT
1
REGION38
chr19:34152260-34300950
ALT
1
REGION39
chr19:22120850-22300666
ALT
1
REGION4
chr2:36225959-36363315
ALT
1
REGION40
chr20:17771102-17893471
ALT
1
REGION41
chr21:14424141-14475471
ALT
1
REGION42
chr21:22102474-22296968
ALT
1
REGION43
chr21:32769079-32837937
ALT
1
REGION44
chr2:148934069-149024119
ALT
1
REGION5
chr3:151589366-151759498
ALT
1
REGION50
chr12:10001-173298
ALT
1
REGION6
chr4:34517955-34883858
ALT
1
REGION61
chr5:29036498-29254469
ALT
1
REGION7
chr4:155835378-155987264
ALT
1
REGION73
chr3:11815268-11986497
ALT
1
REGION8
chr5:162373667-162541648
ALT
1
REGION9
chr5:12681426-12744010
ALT
1
REGION99
chr6:168796076-168951646
ALT
1
RFLNB
chr17:402638-722442
FIX
1
RNA5S_REGION_1
chr1:228408802-228753027
FIX
1
RYBP
chr3:72325441-72740399
FIX
1
SAMD1
chr19:13788160-14281006
FIX
1
SBNO2
chr19:1107414-1158195
ALT
1
SERPIN_REGION_1
chr14:104449322-104622880
ALT
1
SHANK3
chr22:50663907-50764925
FIX
1
SLC12A7
chr5:981494-1161361
ALT
1
SLC14A2_AS1
chr18:45379886-45610729
FIX
1
SLC25A26
chr3:66023201-66396803
FIX
1
SLC37A4
chr11:118978401-119087276
FIX
1
SLC39A4
chr8:144269398-144434518
FIX
1
SLC5A11
chr16:24749301-25017484
FIX
1
SLC6A3
chr5:1318299-1509772
ALT
1
SMA
chr5:69216819-71614443
ALT
2
SNTB2
chr16:69140151-69224690
ALT
1
SPATC1L
chr21:46140942-46221322
ALT
1
SPC25
chr2:168830363-168937194
ALT
1
TBCE
chr1:235360200-235568613
NOVEL
1
TMEM50B
chr21:33405429-33512559
ALT
1
TRB
chr7:142038121-143088503
ALT
1
TRIM69
chr15:44676664-44913053
ALT
1
UGT2B17
chr4:68306359-69010457
ALT
1
WDR81
chr17:1569973-1767739
ALT
1
ZNF66
chr19:20663141-21042381
ALT
1
General
Assembly name GRCh38.p13
Release date 2019-03-01
Assembly type haploid-with-alt-loci
Release type patch
Assembly units 38
Total bases 3,272,116,950
Total non-N bases 3,110,748,599
Primary assembly N50 67,794,873
Regions
Total regions 358
Regions with alternate loci 178
Regions with FIX patches 113
Regions with NOVEL patches 72
Regions as PAR 4
Alternate loci and patches
Alternate loci 261
Alternate loci aligned to primary assembly 261
FIX patches 113
FIX patches aligned to primary assembly 112
NOVEL patches 72
NOVEL patches aligned to primary assembly 72