Skip navigation and go to main content

Human Genome Assembly GRCh38

Information on tiling path files (TPFs) for the assembly is available at TPF Overview.

Other assembly versions:
Chromosome lengths are calculated by summing the length of the placed scaffolds and estimated gaps.
Chromosome Total length (bp) GenBank accession RefSeq accession
1 248,956,422 CM000663.2 NC_000001.11
2 242,193,529 CM000664.2 NC_000002.12
3 198,295,559 CM000665.2 NC_000003.12
4 190,214,555 CM000666.2 NC_000004.12
5 181,538,259 CM000667.2 NC_000005.10
6 170,805,979 CM000668.2 NC_000006.12
7 159,345,973 CM000669.2 NC_000007.14
8 145,138,636 CM000670.2 NC_000008.11
9 138,394,717 CM000671.2 NC_000009.12
10 133,797,422 CM000672.2 NC_000010.11
11 135,086,622 CM000673.2 NC_000011.10
12 133,275,309 CM000674.2 NC_000012.12
13 114,364,328 CM000675.2 NC_000013.11
14 107,043,718 CM000676.2 NC_000014.9
15 101,991,189 CM000677.2 NC_000015.10
16 90,338,345 CM000678.2 NC_000016.10
17 83,257,441 CM000679.2 NC_000017.11
18 80,373,285 CM000680.2 NC_000018.10
19 58,617,616 CM000681.2 NC_000019.10
20 64,444,167 CM000682.2 NC_000020.11
21 46,709,983 CM000683.2 NC_000021.9
22 50,818,468 CM000684.2 NC_000022.11
X 156,040,895 CM000685.2 NC_000023.11
Y 57,227,415 CM000686.2 NC_000024.10
Total lengths are calculated by summing the length of the sequenced bases and estimated gaps.
Chromosome All scaffolds Placed scaffolds Unplaced scaffolds
1 249,698,942 248,956,422 742,520
2 242,508,799 242,193,529 315,270
3 198,450,956 198,295,559 155,397
4 190,424,264 190,214,555 209,709
5 181,630,948 181,538,259 92,689
6 170,805,979 170,805,979 0
7 159,345,973 159,345,973 0
8 145,138,636 145,138,636 0
9 138,688,728 138,394,717 294,011
10 133,797,422 133,797,422 0
11 135,186,938 135,086,622 100,316
12 133,275,309 133,275,309 0
13 114,364,328 114,364,328 0
14 108,136,338 107,043,718 1,092,620
15 102,439,437 101,991,189 448,248
16 92,211,104 90,338,345 1,872,759
17 83,836,422 83,257,441 578,981
18 80,373,285 80,373,285 0
19 58,617,616 58,617,616 0
20 64,444,167 64,444,167 0
21 46,709,983 46,709,983 0
22 51,857,516 50,818,468 1,039,048
X 156,040,895 156,040,895 0
Y 57,264,655 57,227,415 37,240
Un 4,485,509 na 4,485,509
Genome 3,099,734,149 3,088,269,832 11,464,317
Region Location Sequence types Scaffold length
1Q21 chr1:144488706-144674781 ALT 185,285
ABR chr17:960754-1449331 ALT 548,456
ADAM5 chr8:39094318-39873856 ALT 624,492
APOBEC chr22:38884294-39011160 ALT 96,924
APOL5 chr22:35685234-35942668 ALT 263,666
B3GNTL1 chr17:82922720-83103577 ALT 178,921
CCL5_TBC1D3 chr17:35765469-38841755 ALT 3,202,874
CEACAM_REGION_1 chr19:41456581-41682000 ALT 233,762
CYP2D6 chr22:42077656-42253758 ALT 412,927
DEFENSIN_REGION_1 chr8:7308874-7617127 ALT 300,230
DOC2B_RPH3AL chr17:60001-402637 ALT 513,412
ELANE chr19:821158-881412 ALT 61,734
GPI chr19:34350807-34392977 ALT 43,156
IGH chr14:92885439-94394539 ALT 1,511,111
IGL chr22:22373449-22624257 ALT 259,914
KRTAP_REGION_1 chr17:40850733-41432935 ALT 569,697
KRTAP_REGION_2 chr11:1523474-1740879 ALT 391,717
LPPR1 chr9:100948798-101378291 ALT 439,082
LRC_KIR chr19:54025634-55084318 ALT 13,658,688
MAMDC2 chr9:70024113-70189318 ALT 171,286
MAPT chr17:45309498-46903773 ALT 3,245,182
MCTP1 chr5:95169857-95254491 ALT 101,241
MEGF11 chr15:65908183-66284818 ALT 388,773
MHC chr6:28510120-33480577 ALT 33,190,315
MTX1 chr1:155210382-155305245 ALT 110,268
MUCIN_REGION_1 chr11:937258-1150311 ALT 325,323
MUCIN_REGION_2 chr3:195629504-195827492 ALT 1,225,334
OLFACTORY_REGION_1 chr11:56189252-56873567 ALT 392,407
OLFACTORY_REGION_2 chr11:7779133-7972558 ALT 204,059
OLFACTORY_REGION_3 chr1:248352027-248511794 ALT 328,046
OVOS2 chr12:31111480-31347345 ALT 238,139
PAM16 chr16:4299637-4530534 ALT 232,857
PRADER_WILLI chr15:21242091-23226874 ALT 1,265,819
PRAME_REGION_1 chr1:13075113-13312803 ALT 256,271
PRH1_PRR4 chr12:10801295-11377386 ALT 1,020,710
RAB11FIP3 chr16:400855-531525 ALT 134,193
REGION10 chr6:79350008-79446911 ALT 124,736
REGION104 chr11:470360-678681 ALT 210,133
REGION105 chr11:2767814-3065846 ALT 296,895
REGION106 chr11:69165291-69229344 ALT 67,707
REGION107 chr11:134773600-134962792 ALT 186,169
REGION108 chr1:2448811-2791270 ALT 354,444
REGION109 chr1:30352191-30456601 ALT 109,528
REGION11 chr7:141633409-141746583 ALT 119,183
REGION110 chr1:234163457-234211370 ALT 50,258
REGION111 chr1:242987893-243895211 ALT 911,658
REGION112 chr1:245305697-245727576 ALT 425,601
REGION113 chr2:728878-860300 ALT 136,240
REGION114 chr2:1204935-1273724 ALT 70,887
REGION115 chr2:1315177-1541254 ALT 223,625
REGION116 chr2:90218337-90402511 ALT 347,199
REGION117 chr2:115908855-116040717 ALT 138,019
REGION118 chr2:116874515-116981849 ALT 110,395
REGION119 chr2:131697037-131806107 ALT 110,099
REGION120 chr2:241787903-242117508 ALT 496,962
REGION121 chr2:3391898-3511146 ALT 120,616
REGION122 chr3:20277967-20382602 ALT 109,187
REGION123 chr3:125665519-125883802 ALT 224,108
REGION124 chr3:154111571-154282042 ALT 173,649
REGION125 chr3:166300784-166544173 ALT 248,252
REGION126 chr3:184425340-184533338 ALT 113,034
REGION127 chr3:197397856-197558882 ALT 162,429
REGION128 chr3:198047549-198235559 ALT 184,404
REGION129 chr4:21521367-21734410 ALT 220,246
REGION13 chr9:69413743-69477097 ALT 71,551
REGION130 chr4:55678095-55785754 ALT 111,943
REGION131 chr4:120164199-120317014 ALT 158,965
REGION132 chr4:186920392-187048061 ALT 119,912
REGION133 chr4:188341423-188542359 ALT 205,944
REGION134 chr4:189361858-190041016 ALT 1,178,442
REGION135 chr5:502435-626896 ALT 126,136
REGION136 chr5:33800665-33963236 ALT 164,558
REGION137 chr5:125279466-125444151 ALT 172,708
REGION138 chr5:177865465-177996111 ALT 262,849
REGION139 chr6:65774814-65944033 ALT 175,808
REGION14 chr9:7428994-7577169 ALT 162,988
REGION140 chr6:68262879-68402208 ALT 152,148
REGION141 chr6:127654803-128521146 ALT 870,480
REGION142 chr6:166220580-166285980 ALT 75,005
REGION143 chr6:169724799-169919706 ALT 197,536
REGION144 chr6:170272763-170535221 ALT 271,782
REGION145 chr7:10001-198548 ALT 348,821
REGION146 chr7:76500982-76722751 ALT 209,586
REGION147 chr7:103086563-103242097 ALT 158,166
REGION148 chr7:148214874-148487860 ALT 271,455
REGION149 chr7:157697532-157820586 ALT 126,434
REGION15 chr9:88179047-88227980 ALT 60,032
REGION150 chr7:158267495-158477174 ALT 209,988
REGION151 chr8:718410-2817440 ALT 2,391,212
REGION152 chr8:57173351-57303398 ALT 141,812
REGION153 chr8:128554723-128925740 ALT 374,415
REGION154 chr8:141333447-141461079 ALT 133,535
REGION155 chr8:141766834-141800272 ALT 36,640
REGION156 chr8:143009713-143163398 ALT 158,983
REGION157 chr8:143509961-143828794 ALT 305,841
REGION158 chr8:144628750-144757761 ALT 132,244
REGION159 chr10:42103240-42298939 ALT 181,496
REGION16 chr10:27285655-27417608 ALT 179,254
REGION160 chr10:77761309-77931226 ALT 188,315
REGION161 chr12:123826509-123945954 ALT 119,498
REGION162 chr12:130323076-130394967 ALT 76,061
REGION163 chr12:131543020-131584984 ALT 56,134
REGION164 chr13:18698351-18884136 ALT 191,684
REGION165 chr13:25652362-25828680 ALT 180,306
REGION166 chr13:70341886-70442876 ALT 103,832
REGION167 chr13:89598964-89764093 ALT 169,134
REGION168 chr13:112182875-112505943 ALT 306,913
REGION169 chr13:113727531-113763795 ALT 37,287
REGION170 chr14:91535865-91854371 ALT 322,166
REGION171 chr14:105533003-106860219 ALT 1,351,393
REGION172 chr15:82289984-82641774 ALT 430,880
REGION173 chr16:1871895-1933852 ALT 63,982
REGION174 chr16:14427144-16998739 ALT 2,659,700
REGION175 chr17:71584518-71819311 ALT 235,827
REGION176 chr17:72833331-72935743 ALT 108,763
REGION177 chr18:43667277-43773892 ALT 111,737
REGION178 chr18:79563122-79725366 ALT 167,999
REGION179 chr20:61886306-62008187 ALT 118,774
REGION18 chr10:45175233-45468971 ALT 309,802
REGION180 chr20:64095055-64274842 ALT 183,433
REGION181 chr20:63414721-63471095 ALT 58,661
REGION182 chr21:17146893-17310433 ALT 166,743
REGION183 chr21:17603695-17744061 ALT 143,900
REGION184 chr22:23354043-23516062 ALT 186,262
REGION185 chr22:23763639-24013509 ALT 304,135
REGION186 chr22:36779214-36877704 ALT 101,331
REGION187 chrX:319338-601516 ALT 558,878
REGION188 chrX:79965154-80097082 ALT 144,206
REGION19 chr11:25170407-25319080 ALT 154,407
REGION2 chr1:153700531-153865738 ALT 182,439
REGION20 chr12:126227198-126405474 ALT 184,319
REGION21 chr12:27996034-28110778 ALT 120,804
REGION22 chr12:57932737-58092755 ALT 169,178
REGION23 chr12:58929265-59060870 ALT 138,655
REGION24 chr12:101111599-101258295 ALT 152,874
REGION25 chr15:27865714-32946929 ALT 5,457,941
REGION26 chr16:55772981-55968548 ALT 192,462
REGION28 chr17:70306278-70524219 ALT 223,995
REGION3 chr1:198370083-198725175 ALT 366,580
REGION30 chr17:77220730-77299326 ALT 90,219
REGION31 chr18:50292194-50574792 ALT 289,831
REGION32 chr18:51662936-51821642 ALT 164,789
REGION33 chr18:67423723-67552551 ALT 198,278
REGION34 chr18:72933122-73024781 ALT 104,552
REGION35 chr18:78493467-78664469 ALT 342,011
REGION36 chr18:78934886-79088997 ALT 317,257
REGION37 chr19:21648290-21809032 ALT 170,222
REGION38 chr19:34152260-34300950 ALT 155,864
REGION39 chr19:22120850-22300666 ALT 188,024
REGION4 chr2:36225959-36363315 ALT 143,390
REGION40 chr20:17771102-17893471 ALT 128,386
REGION41 chr21:14424141-14475471 ALT 63,917
REGION42 chr21:22102474-22296968 ALT 201,197
REGION43 chr21:32769079-32837937 ALT 74,653
REGION44 chr2:148934069-149024119 ALT 96,131
REGION5 chr3:151589366-151759498 ALT 180,671
REGION50 chr12:10001-173298 ALT 167,313
REGION6 chr4:34517955-34883858 ALT 376,187
REGION61 chr5:29036498-29254469 ALT 226,852
REGION7 chr4:155835378-155987264 ALT 164,536
REGION73 chr3:11815268-11986497 ALT 173,151
REGION8 chr5:162373667-162541648 ALT 173,459
REGION9 chr5:12681426-12744010 ALT 82,728
REGION99 chr6:168796076-168951646 ALT 185,823
SBNO2 chr19:1107414-1158195 ALT 52,969
SERPIN_REGION_1 chr14:104449322-104622880 ALT 180,703
SLC12A7 chr5:981494-1161361 ALT 179,043
SLC6A3 chr5:1318299-1509772 ALT 195,710
SMA chr5:69216819-71614443 ALT 2,757,346
SNTB2 chr16:69140151-69224690 ALT 89,672
SPATC1L chr21:46140942-46221322 ALT 82,692
SPC25 chr2:168830363-168937194 ALT 123,821
TMEM50B chr21:33405429-33512559 ALT 116,689
TRB chr7:142038121-143088503 ALT 1,111,570
TRIM69 chr15:44676664-44913053 ALT 244,917
UGT2B17 chr4:68306359-69010457 ALT 586,476
WDR81 chr17:1569973-1767739 ALT 196,688
ZNF66 chr19:20663141-21042381 ALT 385,657
N50 is a measure of contiguity. 50% of the bases reside in a scaffold of this length or greater.
Chromosome All scaffolds Placed scaffolds Unplaced scaffolds
1 121,390,471 121,390,471 127,682
2 147,687,514 147,687,514 161,471
3 104,529,985 104,529,985 155,397
4 131,283,174 131,283,174 209,709
5 46,425,900 46,425,900 92,689
6 110,516,045 110,516,045 0
7 96,829,194 96,829,194 0
8 39,736,957 39,736,957 0
9 70,114,165 70,114,165 176,845
10 92,093,901 92,093,901 0
11 47,073,726 47,073,726 100,316
12 94,988,110 94,988,110 0
13 67,794,873 67,794,873 0
14 88,660,195 88,660,195 194,050
15 78,704,315 78,704,315 448,248
16 43,847,663 43,847,663 1,872,759
17 54,806,562 54,806,562 185,591
18 59,352,079 59,352,079 0
19 31,366,742 31,366,742 0
20 33,282,659 33,282,659 0
21 33,734,175 33,734,175 0
22 31,264,301 31,264,301 165,050
X 34,966,268 34,966,268 0
Y 6,276,129 6,276,129 37,240
Un 161,147 na 161,147
Genome 67,794,873 70,114,165 176,845
Region Location Sequence types Scaffold length
1Q21 chr1:144488706-144674781 ALT 185,285
ABR chr17:960754-1449331 ALT 391,357
ADAM5 chr8:39094318-39873856 ALT 624,492
APOBEC chr22:38884294-39011160 ALT 96,924
APOL5 chr22:35685234-35942668 ALT 263,666
B3GNTL1 chr17:82922720-83103577 ALT 178,921
CCL5_TBC1D3 chr17:35765469-38841755 ALT 2,877,074
CEACAM_REGION_1 chr19:41456581-41682000 ALT 233,762
CYP2D6 chr22:42077656-42253758 ALT 162,811
DEFENSIN_REGION_1 chr8:7308874-7617127 ALT 300,230
DOC2B_RPH3AL chr17:60001-402637 ALT 375,691
ELANE chr19:821158-881412 ALT 61,734
GPI chr19:34350807-34392977 ALT 43,156
IGH chr14:92885439-94394539 ALT 1,511,111
IGL chr22:22373449-22624257 ALT 259,914
KRTAP_REGION_1 chr17:40850733-41432935 ALT 133,151
KRTAP_REGION_2 chr11:1523474-1740879 ALT 214,625
LPPR1 chr9:100948798-101378291 ALT 439,082
LRC_KIR chr19:54025634-55084318 ALT 987,100
MAMDC2 chr9:70024113-70189318 ALT 171,286
MAPT chr17:45309498-46903773 ALT 1,821,992
MCTP1 chr5:95169857-95254491 ALT 101,241
MEGF11 chr15:65908183-66284818 ALT 388,773
MHC chr6:28510120-33480577 ALT 4,677,643
MTX1 chr1:155210382-155305245 ALT 110,268
MUCIN_REGION_1 chr11:937258-1150311 ALT 218,612
MUCIN_REGION_2 chr3:195629504-195827492 ALT 165,607
OLFACTORY_REGION_1 chr11:56189252-56873567 ALT 200,998
OLFACTORY_REGION_2 chr11:7779133-7972558 ALT 204,059
OLFACTORY_REGION_3 chr1:248352027-248511794 ALT 165,834
OVOS2 chr12:31111480-31347345 ALT 238,139
PAM16 chr16:4299637-4530534 ALT 232,857
PRADER_WILLI chr15:21242091-23226874 ALT 327,382
PRAME_REGION_1 chr1:13075113-13312803 ALT 256,271
PRH1_PRR4 chr12:10801295-11377386 ALT 572,349
RAB11FIP3 chr16:400855-531525 ALT 134,193
REGION10 chr6:79350008-79446911 ALT 124,736
REGION104 chr11:470360-678681 ALT 210,133
REGION105 chr11:2767814-3065846 ALT 296,895
REGION106 chr11:69165291-69229344 ALT 67,707
REGION107 chr11:134773600-134962792 ALT 186,169
REGION108 chr1:2448811-2791270 ALT 354,444
REGION109 chr1:30352191-30456601 ALT 109,528
REGION11 chr7:141633409-141746583 ALT 119,183
REGION110 chr1:234163457-234211370 ALT 50,258
REGION111 chr1:242987893-243895211 ALT 911,658
REGION112 chr1:245305697-245727576 ALT 425,601
REGION113 chr2:728878-860300 ALT 136,240
REGION114 chr2:1204935-1273724 ALT 70,887
REGION115 chr2:1315177-1541254 ALT 223,625
REGION116 chr2:90218337-90402511 ALT 214,158
REGION117 chr2:115908855-116040717 ALT 138,019
REGION118 chr2:116874515-116981849 ALT 110,395
REGION119 chr2:131697037-131806107 ALT 110,099
REGION120 chr2:241787903-242117508 ALT 161,578
REGION121 chr2:3391898-3511146 ALT 120,616
REGION122 chr3:20277967-20382602 ALT 109,187
REGION123 chr3:125665519-125883802 ALT 224,108
REGION124 chr3:154111571-154282042 ALT 173,649
REGION125 chr3:166300784-166544173 ALT 248,252
REGION126 chr3:184425340-184533338 ALT 113,034
REGION127 chr3:197397856-197558882 ALT 162,429
REGION128 chr3:198047549-198235559 ALT 184,404
REGION129 chr4:21521367-21734410 ALT 220,246
REGION13 chr9:69413743-69477097 ALT 71,551
REGION130 chr4:55678095-55785754 ALT 111,943
REGION131 chr4:120164199-120317014 ALT 158,965
REGION132 chr4:186920392-187048061 ALT 119,912
REGION133 chr4:188341423-188542359 ALT 205,944
REGION134 chr4:189361858-190041016 ALT 378,547
REGION135 chr5:502435-626896 ALT 126,136
REGION136 chr5:33800665-33963236 ALT 164,558
REGION137 chr5:125279466-125444151 ALT 172,708
REGION138 chr5:177865465-177996111 ALT 131,892
REGION139 chr6:65774814-65944033 ALT 175,808
REGION14 chr9:7428994-7577169 ALT 162,988
REGION140 chr6:68262879-68402208 ALT 152,148
REGION141 chr6:127654803-128521146 ALT 870,480
REGION142 chr6:166220580-166285980 ALT 75,005
REGION143 chr6:169724799-169919706 ALT 197,536
REGION144 chr6:170272763-170535221 ALT 271,782
REGION145 chr7:10001-198548 ALT 190,869
REGION146 chr7:76500982-76722751 ALT 209,586
REGION147 chr7:103086563-103242097 ALT 158,166
REGION148 chr7:148214874-148487860 ALT 271,455
REGION149 chr7:157697532-157820586 ALT 126,434
REGION15 chr9:88179047-88227980 ALT 60,032
REGION150 chr7:158267495-158477174 ALT 209,988
REGION151 chr8:718410-2817440 ALT 318,687
REGION152 chr8:57173351-57303398 ALT 141,812
REGION153 chr8:128554723-128925740 ALT 374,415
REGION154 chr8:141333447-141461079 ALT 133,535
REGION155 chr8:141766834-141800272 ALT 36,640
REGION156 chr8:143009713-143163398 ALT 158,983
REGION157 chr8:143509961-143828794 ALT 305,841
REGION158 chr8:144628750-144757761 ALT 132,244
REGION159 chr10:42103240-42298939 ALT 181,496
REGION16 chr10:27285655-27417608 ALT 179,254
REGION160 chr10:77761309-77931226 ALT 188,315
REGION161 chr12:123826509-123945954 ALT 119,498
REGION162 chr12:130323076-130394967 ALT 76,061
REGION163 chr12:131543020-131584984 ALT 56,134
REGION164 chr13:18698351-18884136 ALT 191,684
REGION165 chr13:25652362-25828680 ALT 180,306
REGION166 chr13:70341886-70442876 ALT 103,832
REGION167 chr13:89598964-89764093 ALT 169,134
REGION168 chr13:112182875-112505943 ALT 306,913
REGION169 chr13:113727531-113763795 ALT 37,287
REGION170 chr14:91535865-91854371 ALT 322,166
REGION171 chr14:105533003-106860219 ALT 1,351,393
REGION172 chr15:82289984-82641774 ALT 430,880
REGION173 chr16:1871895-1933852 ALT 63,982
REGION174 chr16:14427144-16998739 ALT 2,659,700
REGION175 chr17:71584518-71819311 ALT 235,827
REGION176 chr17:72833331-72935743 ALT 108,763
REGION177 chr18:43667277-43773892 ALT 111,737
REGION178 chr18:79563122-79725366 ALT 167,999
REGION179 chr20:61886306-62008187 ALT 118,774
REGION18 chr10:45175233-45468971 ALT 309,802
REGION180 chr20:64095055-64274842 ALT 183,433
REGION181 chr20:63414721-63471095 ALT 58,661
REGION182 chr21:17146893-17310433 ALT 166,743
REGION183 chr21:17603695-17744061 ALT 143,900
REGION184 chr22:23354043-23516062 ALT 186,262
REGION185 chr22:23763639-24013509 ALT 304,135
REGION186 chr22:36779214-36877704 ALT 101,331
REGION187 chrX:319338-601516 ALT 284,869
REGION188 chrX:79965154-80097082 ALT 144,206
REGION19 chr11:25170407-25319080 ALT 154,407
REGION2 chr1:153700531-153865738 ALT 182,439
REGION20 chr12:126227198-126405474 ALT 184,319
REGION21 chr12:27996034-28110778 ALT 120,804
REGION22 chr12:57932737-58092755 ALT 169,178
REGION23 chr12:58929265-59060870 ALT 138,655
REGION24 chr12:101111599-101258295 ALT 152,874
REGION25 chr15:27865714-32946929 ALT 5,161,414
REGION26 chr16:55772981-55968548 ALT 192,462
REGION28 chr17:70306278-70524219 ALT 223,995
REGION3 chr1:198370083-198725175 ALT 366,580
REGION30 chr17:77220730-77299326 ALT 90,219
REGION31 chr18:50292194-50574792 ALT 289,831
REGION32 chr18:51662936-51821642 ALT 164,789
REGION33 chr18:67423723-67552551 ALT 198,278
REGION34 chr18:72933122-73024781 ALT 104,552
REGION35 chr18:78493467-78664469 ALT 174,061
REGION36 chr18:78934886-79088997 ALT 159,547
REGION37 chr19:21648290-21809032 ALT 170,222
REGION38 chr19:34152260-34300950 ALT 155,864
REGION39 chr19:22120850-22300666 ALT 188,024
REGION4 chr2:36225959-36363315 ALT 143,390
REGION40 chr20:17771102-17893471 ALT 128,386
REGION41 chr21:14424141-14475471 ALT 63,917
REGION42 chr21:22102474-22296968 ALT 201,197
REGION43 chr21:32769079-32837937 ALT 74,653
REGION44 chr2:148934069-149024119 ALT 96,131
REGION5 chr3:151589366-151759498 ALT 180,671
REGION50 chr12:10001-173298 ALT 167,313
REGION6 chr4:34517955-34883858 ALT 376,187
REGION61 chr5:29036498-29254469 ALT 226,852
REGION7 chr4:155835378-155987264 ALT 164,536
REGION73 chr3:11815268-11986497 ALT 173,151
REGION8 chr5:162373667-162541648 ALT 173,459
REGION9 chr5:12681426-12744010 ALT 82,728
REGION99 chr6:168796076-168951646 ALT 185,823
SBNO2 chr19:1107414-1158195 ALT 52,969
SERPIN_REGION_1 chr14:104449322-104622880 ALT 180,703
SLC12A7 chr5:981494-1161361 ALT 179,043
SLC6A3 chr5:1318299-1509772 ALT 195,710
SMA chr5:69216819-71614443 ALT 1,612,928
SNTB2 chr16:69140151-69224690 ALT 89,672
SPATC1L chr21:46140942-46221322 ALT 82,692
SPC25 chr2:168830363-168937194 ALT 123,821
TMEM50B chr21:33405429-33512559 ALT 116,689
TRB chr7:142038121-143088503 ALT 1,111,570
TRIM69 chr15:44676664-44913053 ALT 244,917
UGT2B17 chr4:68306359-69010457 ALT 586,476
WDR81 chr17:1569973-1767739 ALT 196,688
ZNF66 chr19:20663141-21042381 ALT 385,657
Ungapped lengths are calculated by summing the length of sequenced bases only. 'Ns' are excluded.
Chromosome All scaffolds Placed scaffolds Unplaced scaffolds
1 231,223,641 230,481,121 742,520
2 240,863,511 240,548,241 315,270
3 198,255,541 198,100,144 155,397
4 189,962,376 189,752,667 209,709
5 181,358,067 181,265,378 92,689
6 170,078,524 170,078,524 0
7 158,970,135 158,970,135 0
8 144,768,136 144,768,136 0
9 122,084,564 121,790,553 294,011
10 133,263,006 133,263,006 0
11 134,634,058 134,533,742 100,316
12 133,137,821 133,137,821 0
13 97,983,128 97,983,128 0
14 91,660,769 90,568,149 1,092,620
15 85,089,576 84,641,328 448,248
16 83,378,703 81,805,944 1,572,759
17 83,481,871 82,920,216 561,655
18 80,089,650 80,089,650 0
19 58,440,758 58,440,758 0
20 63,944,268 63,944,268 0
21 40,088,623 40,088,623 0
22 40,181,019 39,159,782 1,021,237
X 154,893,034 154,893,034 0
Y 26,452,288 26,415,048 37,240
Un 4,328,403 na 4,328,403
Genome 2,948,611,470 2,937,639,396 10,972,074
Region Location Sequence types Scaffold length
1Q21 chr1:144488706-144674781 ALT 185,285
ABR chr17:960754-1449331 ALT 548,456
ADAM5 chr8:39094318-39873856 ALT 624,492
APOBEC chr22:38884294-39011160 ALT 96,924
APOL5 chr22:35685234-35942668 ALT 263,666
B3GNTL1 chr17:82922720-83103577 ALT 178,921
CCL5_TBC1D3 chr17:35765469-38841755 ALT 3,202,874
CEACAM_REGION_1 chr19:41456581-41682000 ALT 233,762
CYP2D6 chr22:42077656-42253758 ALT 412,927
DEFENSIN_REGION_1 chr8:7308874-7617127 ALT 300,230
DOC2B_RPH3AL chr17:60001-402637 ALT 513,412
ELANE chr19:821158-881412 ALT 61,734
GPI chr19:34350807-34392977 ALT 43,156
IGH chr14:92885439-94394539 ALT 1,511,111
IGL chr22:22373449-22624257 ALT 259,914
KRTAP_REGION_1 chr17:40850733-41432935 ALT 569,697
KRTAP_REGION_2 chr11:1523474-1740879 ALT 391,717
LPPR1 chr9:100948798-101378291 ALT 439,082
LRC_KIR chr19:54025634-55084318 ALT 10,915,688
MAMDC2 chr9:70024113-70189318 ALT 171,286
MAPT chr17:45309498-46903773 ALT 3,195,182
MCTP1 chr5:95169857-95254491 ALT 101,241
MEGF11 chr15:65908183-66284818 ALT 388,773
MHC chr6:28510120-33480577 ALT 27,789,994
MTX1 chr1:155210382-155305245 ALT 110,268
MUCIN_REGION_1 chr11:937258-1150311 ALT 325,323
MUCIN_REGION_2 chr3:195629504-195827492 ALT 1,225,334
OLFACTORY_REGION_1 chr11:56189252-56873567 ALT 392,407
OLFACTORY_REGION_2 chr11:7779133-7972558 ALT 204,059
OLFACTORY_REGION_3 chr1:248352027-248511794 ALT 328,046
OVOS2 chr12:31111480-31347345 ALT 238,139
PAM16 chr16:4299637-4530534 ALT 232,857
PRADER_WILLI chr15:21242091-23226874 ALT 1,265,819
PRAME_REGION_1 chr1:13075113-13312803 ALT 256,271
PRH1_PRR4 chr12:10801295-11377386 ALT 1,020,710
RAB11FIP3 chr16:400855-531525 ALT 134,193
REGION10 chr6:79350008-79446911 ALT 124,736
REGION104 chr11:470360-678681 ALT 210,133
REGION105 chr11:2767814-3065846 ALT 296,895
REGION106 chr11:69165291-69229344 ALT 67,707
REGION107 chr11:134773600-134962792 ALT 186,169
REGION108 chr1:2448811-2791270 ALT 304,444
REGION109 chr1:30352191-30456601 ALT 109,528
REGION11 chr7:141633409-141746583 ALT 119,183
REGION110 chr1:234163457-234211370 ALT 50,258
REGION111 chr1:242987893-243895211 ALT 911,658
REGION112 chr1:245305697-245727576 ALT 425,601
REGION113 chr2:728878-860300 ALT 136,240
REGION114 chr2:1204935-1273724 ALT 70,887
REGION115 chr2:1315177-1541254 ALT 223,625
REGION116 chr2:90218337-90402511 ALT 347,199
REGION117 chr2:115908855-116040717 ALT 138,019
REGION118 chr2:116874515-116981849 ALT 110,395
REGION119 chr2:131697037-131806107 ALT 110,099
REGION120 chr2:241787903-242117508 ALT 496,962
REGION121 chr2:3391898-3511146 ALT 120,616
REGION122 chr3:20277967-20382602 ALT 109,187
REGION123 chr3:125665519-125883802 ALT 224,108
REGION124 chr3:154111571-154282042 ALT 173,649
REGION125 chr3:166300784-166544173 ALT 248,252
REGION126 chr3:184425340-184533338 ALT 113,034
REGION127 chr3:197397856-197558882 ALT 162,429
REGION128 chr3:198047549-198235559 ALT 184,404
REGION129 chr4:21521367-21734410 ALT 220,246
REGION13 chr9:69413743-69477097 ALT 71,551
REGION130 chr4:55678095-55785754 ALT 111,943
REGION131 chr4:120164199-120317014 ALT 158,965
REGION132 chr4:186920392-187048061 ALT 119,912
REGION133 chr4:188341423-188542359 ALT 205,944
REGION134 chr4:189361858-190041016 ALT 1,178,442
REGION135 chr5:502435-626896 ALT 126,136
REGION136 chr5:33800665-33963236 ALT 164,558
REGION137 chr5:125279466-125444151 ALT 172,708
REGION138 chr5:177865465-177996111 ALT 262,849
REGION139 chr6:65774814-65944033 ALT 175,808
REGION14 chr9:7428994-7577169 ALT 162,988
REGION140 chr6:68262879-68402208 ALT 152,148
REGION141 chr6:127654803-128521146 ALT 870,480
REGION142 chr6:166220580-166285980 ALT 75,005
REGION143 chr6:169724799-169919706 ALT 197,536
REGION144 chr6:170272763-170535221 ALT 271,782
REGION145 chr7:10001-198548 ALT 348,821
REGION146 chr7:76500982-76722751 ALT 209,586
REGION147 chr7:103086563-103242097 ALT 158,166
REGION148 chr7:148214874-148487860 ALT 271,455
REGION149 chr7:157697532-157820586 ALT 126,434
REGION15 chr9:88179047-88227980 ALT 60,032
REGION150 chr7:158267495-158477174 ALT 209,988
REGION151 chr8:718410-2817440 ALT 2,391,212
REGION152 chr8:57173351-57303398 ALT 141,812
REGION153 chr8:128554723-128925740 ALT 374,415
REGION154 chr8:141333447-141461079 ALT 133,535
REGION155 chr8:141766834-141800272 ALT 36,640
REGION156 chr8:143009713-143163398 ALT 158,983
REGION157 chr8:143509961-143828794 ALT 305,841
REGION158 chr8:144628750-144757761 ALT 132,244
REGION159 chr10:42103240-42298939 ALT 181,496
REGION16 chr10:27285655-27417608 ALT 179,254
REGION160 chr10:77761309-77931226 ALT 188,315
REGION161 chr12:123826509-123945954 ALT 119,498
REGION162 chr12:130323076-130394967 ALT 76,061
REGION163 chr12:131543020-131584984 ALT 56,134
REGION164 chr13:18698351-18884136 ALT 191,684
REGION165 chr13:25652362-25828680 ALT 180,306
REGION166 chr13:70341886-70442876 ALT 103,832
REGION167 chr13:89598964-89764093 ALT 169,134
REGION168 chr13:112182875-112505943 ALT 306,913
REGION169 chr13:113727531-113763795 ALT 37,287
REGION170 chr14:91535865-91854371 ALT 322,166
REGION171 chr14:105533003-106860219 ALT 1,351,393
REGION172 chr15:82289984-82641774 ALT 430,880
REGION173 chr16:1871895-1933852 ALT 63,982
REGION174 chr16:14427144-16998739 ALT 2,659,700
REGION175 chr17:71584518-71819311 ALT 235,827
REGION176 chr17:72833331-72935743 ALT 108,763
REGION177 chr18:43667277-43773892 ALT 111,737
REGION178 chr18:79563122-79725366 ALT 167,999
REGION179 chr20:61886306-62008187 ALT 118,774
REGION18 chr10:45175233-45468971 ALT 309,802
REGION180 chr20:64095055-64274842 ALT 183,433
REGION181 chr20:63414721-63471095 ALT 58,661
REGION182 chr21:17146893-17310433 ALT 166,743
REGION183 chr21:17603695-17744061 ALT 143,900
REGION184 chr22:23354043-23516062 ALT 186,262
REGION185 chr22:23763639-24013509 ALT 304,135
REGION186 chr22:36779214-36877704 ALT 101,331
REGION187 chrX:319338-601516 ALT 558,878
REGION188 chrX:79965154-80097082 ALT 144,206
REGION19 chr11:25170407-25319080 ALT 154,407
REGION2 chr1:153700531-153865738 ALT 182,439
REGION20 chr12:126227198-126405474 ALT 184,319
REGION21 chr12:27996034-28110778 ALT 120,804
REGION22 chr12:57932737-58092755 ALT 169,178
REGION23 chr12:58929265-59060870 ALT 138,655
REGION24 chr12:101111599-101258295 ALT 152,874
REGION25 chr15:27865714-32946929 ALT 5,053,934
REGION26 chr16:55772981-55968548 ALT 192,462
REGION28 chr17:70306278-70524219 ALT 223,995
REGION3 chr1:198370083-198725175 ALT 366,580
REGION30 chr17:77220730-77299326 ALT 90,219
REGION31 chr18:50292194-50574792 ALT 289,831
REGION32 chr18:51662936-51821642 ALT 164,789
REGION33 chr18:67423723-67552551 ALT 148,278
REGION34 chr18:72933122-73024781 ALT 104,552
REGION35 chr18:78493467-78664469 ALT 342,011
REGION36 chr18:78934886-79088997 ALT 317,257
REGION37 chr19:21648290-21809032 ALT 170,222
REGION38 chr19:34152260-34300950 ALT 155,864
REGION39 chr19:22120850-22300666 ALT 188,024
REGION4 chr2:36225959-36363315 ALT 143,390
REGION40 chr20:17771102-17893471 ALT 128,386
REGION41 chr21:14424141-14475471 ALT 63,917
REGION42 chr21:22102474-22296968 ALT 201,197
REGION43 chr21:32769079-32837937 ALT 74,653
REGION44 chr2:148934069-149024119 ALT 96,131
REGION5 chr3:151589366-151759498 ALT 180,671
REGION50 chr12:10001-173298 ALT 167,313
REGION6 chr4:34517955-34883858 ALT 376,187
REGION61 chr5:29036498-29254469 ALT 226,852
REGION7 chr4:155835378-155987264 ALT 164,536
REGION73 chr3:11815268-11986497 ALT 173,151
REGION8 chr5:162373667-162541648 ALT 173,459
REGION9 chr5:12681426-12744010 ALT 82,728
REGION99 chr6:168796076-168951646 ALT 185,823
SBNO2 chr19:1107414-1158195 ALT 52,969
SERPIN_REGION_1 chr14:104449322-104622880 ALT 180,703
SLC12A7 chr5:981494-1161361 ALT 179,043
SLC6A3 chr5:1318299-1509772 ALT 195,710
SMA chr5:69216819-71614443 ALT 2,607,346
SNTB2 chr16:69140151-69224690 ALT 89,672
SPATC1L chr21:46140942-46221322 ALT 82,692
SPC25 chr2:168830363-168937194 ALT 123,821
TMEM50B chr21:33405429-33512559 ALT 116,689
TRB chr7:142038121-143088503 ALT 1,111,570
TRIM69 chr15:44676664-44913053 ALT 244,917
UGT2B17 chr4:68306359-69010457 ALT 586,476
WDR81 chr17:1569973-1767739 ALT 196,688
ZNF66 chr19:20663141-21042381 ALT 385,657
Spanned gaps are found within scaffolds and there is some evidence suggesting linkage between the two sequences flanking the gap. Unspanned gaps are found between scaffolds and there is no evidence of linkage.
Spanned gaps Unspanned gaps
Chromosome   All scaffolds Placed scaffolds Unplaced scaffolds All scaffolds Placed scaffolds Unplaced scaffolds
1 64 64 0 13 13 0
2 14 14 0 8 8 0
3 13 13 0 8 8 0
4 8 8 0 10 10 0
5 19 19 0 19 19 0
6 10 10 0 6 6 0
7 10 10 0 7 7 0
8 5 5 0 9 9 0
9 21 21 0 23 23 0
10 30 30 0 7 7 0
11 10 10 0 9 9 0
12 15 15 0 10 10 0
13 1 1 0 21 21 0
14 7 7 0 20 20 0
15 9 9 0 9 9 0
16 17 11 6 12 12 0
17 39 25 14 12 12 0
18 23 23 0 14 14 0
19 1 1 0 9 9 0
20 61 61 0 21 21 0
21 7 7 0 42 42 0
22 25 7 18 38 38 0
X 19 19 0 10 10 0
Y 44 44 0 12 12 0
Un 54 na 54 0 na 0
Genome 526 434 92 349 349 0
Region Location Sequence types Scaffolds Spanned gaps Unspanned gaps
1Q21 chr1:144488706-144674781 ALT 1 0 0
ABR chr17:960754-1449331 ALT 2 0 0
ADAM5 chr8:39094318-39873856 ALT 1 0 0
APOBEC chr22:38884294-39011160 ALT 1 0 0
APOL5 chr22:35685234-35942668 ALT 1 0 0
B3GNTL1 chr17:82922720-83103577 ALT 1 0 0
CCL5_TBC1D3 chr17:35765469-38841755 ALT 2 0 0
CEACAM_REGION_1 chr19:41456581-41682000 ALT 1 0 0
CYP2D6 chr22:42077656-42253758 ALT 3 0 0
DEFENSIN_REGION_1 chr8:7308874-7617127 ALT 1 0 0
DOC2B_RPH3AL chr17:60001-402637 ALT 2 0 0
ELANE chr19:821158-881412 ALT 1 0 0
GPI chr19:34350807-34392977 ALT 1 0 0
IGH chr14:92885439-94394539 ALT 1 0 0
IGL chr22:22373449-22624257 ALT 1 0 0
KRTAP_REGION_1 chr17:40850733-41432935 ALT 4 0 0
KRTAP_REGION_2 chr11:1523474-1740879 ALT 2 0 0
LPPR1 chr9:100948798-101378291 ALT 1 0 0
LRC_KIR chr19:54025634-55084318 ALT 35 17 0
MAMDC2 chr9:70024113-70189318 ALT 1 0 0
MAPT chr17:45309498-46903773 ALT 2 1 0
MCTP1 chr5:95169857-95254491 ALT 1 0 0
MEGF11 chr15:65908183-66284818 ALT 1 0 0
MHC chr6:28510120-33480577 ALT 8 98 0
MTX1 chr1:155210382-155305245 ALT 1 0 0
MUCIN_REGION_1 chr11:937258-1150311 ALT 2 0 0
MUCIN_REGION_2 chr3:195629504-195827492 ALT 7 0 0
OLFACTORY_REGION_1 chr11:56189252-56873567 ALT 2 0 0
OLFACTORY_REGION_2 chr11:7779133-7972558 ALT 1 0 0
OLFACTORY_REGION_3 chr1:248352027-248511794 ALT 2 0 0
OVOS2 chr12:31111480-31347345 ALT 1 0 0
PAM16 chr16:4299637-4530534 ALT 1 0 0
PRADER_WILLI chr15:21242091-23226874 ALT 4 0 0
PRAME_REGION_1 chr1:13075113-13312803 ALT 1 0 0
PRH1_PRR4 chr12:10801295-11377386 ALT 3 0 0
RAB11FIP3 chr16:400855-531525 ALT 1 0 0
REGION10 chr6:79350008-79446911 ALT 1 0 0
REGION104 chr11:470360-678681 ALT 1 0 0
REGION105 chr11:2767814-3065846 ALT 1 0 0
REGION106 chr11:69165291-69229344 ALT 1 0 0
REGION107 chr11:134773600-134962792 ALT 1 0 0
REGION108 chr1:2448811-2791270 ALT 1 1 0
REGION109 chr1:30352191-30456601 ALT 1 0 0
REGION11 chr7:141633409-141746583 ALT 1 0 0
REGION110 chr1:234163457-234211370 ALT 1 0 0
REGION111 chr1:242987893-243895211 ALT 1 0 0
REGION112 chr1:245305697-245727576 ALT 1 0 0
REGION113 chr2:728878-860300 ALT 1 0 0
REGION114 chr2:1204935-1273724 ALT 1 0 0
REGION115 chr2:1315177-1541254 ALT 1 0 0
REGION116 chr2:90218337-90402511 ALT 2 0 0
REGION117 chr2:115908855-116040717 ALT 1 0 0
REGION118 chr2:116874515-116981849 ALT 1 0 0
REGION119 chr2:131697037-131806107 ALT 1 0 0
REGION120 chr2:241787903-242117508 ALT 3 0 0
REGION121 chr2:3391898-3511146 ALT 1 0 0
REGION122 chr3:20277967-20382602 ALT 1 0 0
REGION123 chr3:125665519-125883802 ALT 1 0 0
REGION124 chr3:154111571-154282042 ALT 1 0 0
REGION125 chr3:166300784-166544173 ALT 1 0 0
REGION126 chr3:184425340-184533338 ALT 1 0 0
REGION127 chr3:197397856-197558882 ALT 1 0 0
REGION128 chr3:198047549-198235559 ALT 1 0 0
REGION129 chr4:21521367-21734410 ALT 1 0 0
REGION13 chr9:69413743-69477097 ALT 1 0 0
REGION130 chr4:55678095-55785754 ALT 1 0 0
REGION131 chr4:120164199-120317014 ALT 1 0 0
REGION132 chr4:186920392-187048061 ALT 1 0 0
REGION133 chr4:188341423-188542359 ALT 1 0 0
REGION134 chr4:189361858-190041016 ALT 3 0 0
REGION135 chr5:502435-626896 ALT 1 0 0
REGION136 chr5:33800665-33963236 ALT 1 0 0
REGION137 chr5:125279466-125444151 ALT 1 0 0
REGION138 chr5:177865465-177996111 ALT 2 0 0
REGION139 chr6:65774814-65944033 ALT 1 0 0
REGION14 chr9:7428994-7577169 ALT 1 0 0
REGION140 chr6:68262879-68402208 ALT 1 0 0
REGION141 chr6:127654803-128521146 ALT 1 0 0
REGION142 chr6:166220580-166285980 ALT 1 0 0
REGION143 chr6:169724799-169919706 ALT 1 0 0
REGION144 chr6:170272763-170535221 ALT 1 0 0
REGION145 chr7:10001-198548 ALT 2 0 0
REGION146 chr7:76500982-76722751 ALT 1 0 0
REGION147 chr7:103086563-103242097 ALT 1 0 0
REGION148 chr7:148214874-148487860 ALT 1 0 0
REGION149 chr7:157697532-157820586 ALT 1 0 0
REGION15 chr9:88179047-88227980 ALT 1 0 0
REGION150 chr7:158267495-158477174 ALT 1 0 0
REGION151 chr8:718410-2817440 ALT 7 0 0
REGION152 chr8:57173351-57303398 ALT 1 0 0
REGION153 chr8:128554723-128925740 ALT 1 0 0
REGION154 chr8:141333447-141461079 ALT 1 0 0
REGION155 chr8:141766834-141800272 ALT 1 0 0
REGION156 chr8:143009713-143163398 ALT 1 0 0
REGION157 chr8:143509961-143828794 ALT 1 0 0
REGION158 chr8:144628750-144757761 ALT 1 0 0
REGION159 chr10:42103240-42298939 ALT 1 0 0
REGION16 chr10:27285655-27417608 ALT 1 0 0
REGION160 chr10:77761309-77931226 ALT 1 0 0
REGION161 chr12:123826509-123945954 ALT 1 0 0
REGION162 chr12:130323076-130394967 ALT 1 0 0
REGION163 chr12:131543020-131584984 ALT 1 0 0
REGION164 chr13:18698351-18884136 ALT 1 0 0
REGION165 chr13:25652362-25828680 ALT 1 0 0
REGION166 chr13:70341886-70442876 ALT 1 0 0
REGION167 chr13:89598964-89764093 ALT 1 0 0
REGION168 chr13:112182875-112505943 ALT 1 0 0
REGION169 chr13:113727531-113763795 ALT 1 0 0
REGION170 chr14:91535865-91854371 ALT 1 0 0
REGION171 chr14:105533003-106860219 ALT 1 0 0
REGION172 chr15:82289984-82641774 ALT 1 0 0
REGION173 chr16:1871895-1933852 ALT 1 0 0
REGION174 chr16:14427144-16998739 ALT 1 0 0
REGION175 chr17:71584518-71819311 ALT 1 0 0
REGION176 chr17:72833331-72935743 ALT 1 0 0
REGION177 chr18:43667277-43773892 ALT 1 0 0
REGION178 chr18:79563122-79725366 ALT 1 0 0
REGION179 chr20:61886306-62008187 ALT 1 0 0
REGION18 chr10:45175233-45468971 ALT 1 0 0
REGION180 chr20:64095055-64274842 ALT 1 0 0
REGION181 chr20:63414721-63471095 ALT 1 0 0
REGION182 chr21:17146893-17310433 ALT 1 0 0
REGION183 chr21:17603695-17744061 ALT 1 0 0
REGION184 chr22:23354043-23516062 ALT 1 0 0
REGION185 chr22:23763639-24013509 ALT 1 0 0
REGION186 chr22:36779214-36877704 ALT 1 0 0
REGION187 chrX:319338-601516 ALT 2 0 0
REGION188 chrX:79965154-80097082 ALT 1 0 0
REGION19 chr11:25170407-25319080 ALT 1 0 0
REGION2 chr1:153700531-153865738 ALT 1 0 0
REGION20 chr12:126227198-126405474 ALT 1 0 0
REGION21 chr12:27996034-28110778 ALT 1 0 0
REGION22 chr12:57932737-58092755 ALT 1 0 0
REGION23 chr12:58929265-59060870 ALT 1 0 0
REGION24 chr12:101111599-101258295 ALT 1 0 0
REGION25 chr15:27865714-32946929 ALT 2 4 0
REGION26 chr16:55772981-55968548 ALT 1 0 0
REGION28 chr17:70306278-70524219 ALT 1 0 0
REGION3 chr1:198370083-198725175 ALT 1 0 0
REGION30 chr17:77220730-77299326 ALT 1 0 0
REGION31 chr18:50292194-50574792 ALT 1 0 0
REGION32 chr18:51662936-51821642 ALT 1 0 0
REGION33 chr18:67423723-67552551 ALT 1 1 0
REGION34 chr18:72933122-73024781 ALT 1 0 0
REGION35 chr18:78493467-78664469 ALT 2 0 0
REGION36 chr18:78934886-79088997 ALT 2 0 0
REGION37 chr19:21648290-21809032 ALT 1 0 0
REGION38 chr19:34152260-34300950 ALT 1 0 0
REGION39 chr19:22120850-22300666 ALT 1 0 0
REGION4 chr2:36225959-36363315 ALT 1 0 0
REGION40 chr20:17771102-17893471 ALT 1 0 0
REGION41 chr21:14424141-14475471 ALT 1 0 0
REGION42 chr21:22102474-22296968 ALT 1 0 0
REGION43 chr21:32769079-32837937 ALT 1 0 0
REGION44 chr2:148934069-149024119 ALT 1 0 0
REGION5 chr3:151589366-151759498 ALT 1 0 0
REGION50 chr12:10001-173298 ALT 1 0 0
REGION6 chr4:34517955-34883858 ALT 1 0 0
REGION61 chr5:29036498-29254469 ALT 1 0 0
REGION7 chr4:155835378-155987264 ALT 1 0 0
REGION73 chr3:11815268-11986497 ALT 1 0 0
REGION8 chr5:162373667-162541648 ALT 1 0 0
REGION9 chr5:12681426-12744010 ALT 1 0 0
REGION99 chr6:168796076-168951646 ALT 1 0 0
SBNO2 chr19:1107414-1158195 ALT 1 0 0
SERPIN_REGION_1 chr14:104449322-104622880 ALT 1 0 0
SLC12A7 chr5:981494-1161361 ALT 1 0 0
SLC6A3 chr5:1318299-1509772 ALT 1 0 0
SMA chr5:69216819-71614443 ALT 2 2 0
SNTB2 chr16:69140151-69224690 ALT 1 0 0
SPATC1L chr21:46140942-46221322 ALT 1 0 0
SPC25 chr2:168830363-168937194 ALT 1 0 0
TMEM50B chr21:33405429-33512559 ALT 1 0 0
TRB chr7:142038121-143088503 ALT 1 0 0
TRIM69 chr15:44676664-44913053 ALT 1 0 0
UGT2B17 chr4:68306359-69010457 ALT 1 0 0
WDR81 chr17:1569973-1767739 ALT 1 0 0
ZNF66 chr19:20663141-21042381 ALT 1 0 0
Scaffold counts.
Chromosome All scaffolds Placed scaffolds Unplaced scaffolds
1 21 12 9
2 9 7 2
3 7 6 1
4 10 9 1
5 18 17 1
6 3 3 0
7 6 6 0
8 6 6 0
9 25 21 4
10 6 6 0
11 7 6 1
12 9 9 0
13 18 18 0
14 25 17 8
15 8 7 1
16 10 9 1
17 13 10 3
18 12 12 0
19 7 7 0
20 18 18 0
21 40 40 0
22 45 36 9
X 9 9 0
Y 14 13 1
Un 127 na 127
Genome 473 304 169
Region Location Sequence types Scaffold length
1Q21 chr1:144488706-144674781 ALT 1
ABR chr17:960754-1449331 ALT 2
ADAM5 chr8:39094318-39873856 ALT 1
APOBEC chr22:38884294-39011160 ALT 1
APOL5 chr22:35685234-35942668 ALT 1
B3GNTL1 chr17:82922720-83103577 ALT 1
CCL5_TBC1D3 chr17:35765469-38841755 ALT 2
CEACAM_REGION_1 chr19:41456581-41682000 ALT 1
CYP2D6 chr22:42077656-42253758 ALT 3
DEFENSIN_REGION_1 chr8:7308874-7617127 ALT 1
DOC2B_RPH3AL chr17:60001-402637 ALT 2
ELANE chr19:821158-881412 ALT 1
GPI chr19:34350807-34392977 ALT 1
IGH chr14:92885439-94394539 ALT 1
IGL chr22:22373449-22624257 ALT 1
KRTAP_REGION_1 chr17:40850733-41432935 ALT 4
KRTAP_REGION_2 chr11:1523474-1740879 ALT 2
LPPR1 chr9:100948798-101378291 ALT 1
LRC_KIR chr19:54025634-55084318 ALT 35
MAMDC2 chr9:70024113-70189318 ALT 1
MAPT chr17:45309498-46903773 ALT 2
MCTP1 chr5:95169857-95254491 ALT 1
MEGF11 chr15:65908183-66284818 ALT 1
MHC chr6:28510120-33480577 ALT 8
MTX1 chr1:155210382-155305245 ALT 1
MUCIN_REGION_1 chr11:937258-1150311 ALT 2
MUCIN_REGION_2 chr3:195629504-195827492 ALT 7
OLFACTORY_REGION_1 chr11:56189252-56873567 ALT 2
OLFACTORY_REGION_2 chr11:7779133-7972558 ALT 1
OLFACTORY_REGION_3 chr1:248352027-248511794 ALT 2
OVOS2 chr12:31111480-31347345 ALT 1
PAM16 chr16:4299637-4530534 ALT 1
PRADER_WILLI chr15:21242091-23226874 ALT 4
PRAME_REGION_1 chr1:13075113-13312803 ALT 1
PRH1_PRR4 chr12:10801295-11377386 ALT 3
RAB11FIP3 chr16:400855-531525 ALT 1
REGION10 chr6:79350008-79446911 ALT 1
REGION104 chr11:470360-678681 ALT 1
REGION105 chr11:2767814-3065846 ALT 1
REGION106 chr11:69165291-69229344 ALT 1
REGION107 chr11:134773600-134962792 ALT 1
REGION108 chr1:2448811-2791270 ALT 1
REGION109 chr1:30352191-30456601 ALT 1
REGION11 chr7:141633409-141746583 ALT 1
REGION110 chr1:234163457-234211370 ALT 1
REGION111 chr1:242987893-243895211 ALT 1
REGION112 chr1:245305697-245727576 ALT 1
REGION113 chr2:728878-860300 ALT 1
REGION114 chr2:1204935-1273724 ALT 1
REGION115 chr2:1315177-1541254 ALT 1
REGION116 chr2:90218337-90402511 ALT 2
REGION117 chr2:115908855-116040717 ALT 1
REGION118 chr2:116874515-116981849 ALT 1
REGION119 chr2:131697037-131806107 ALT 1
REGION120 chr2:241787903-242117508 ALT 3
REGION121 chr2:3391898-3511146 ALT 1
REGION122 chr3:20277967-20382602 ALT 1
REGION123 chr3:125665519-125883802 ALT 1
REGION124 chr3:154111571-154282042 ALT 1
REGION125 chr3:166300784-166544173 ALT 1
REGION126 chr3:184425340-184533338 ALT 1
REGION127 chr3:197397856-197558882 ALT 1
REGION128 chr3:198047549-198235559 ALT 1
REGION129 chr4:21521367-21734410 ALT 1
REGION13 chr9:69413743-69477097 ALT 1
REGION130 chr4:55678095-55785754 ALT 1
REGION131 chr4:120164199-120317014 ALT 1
REGION132 chr4:186920392-187048061 ALT 1
REGION133 chr4:188341423-188542359 ALT 1
REGION134 chr4:189361858-190041016 ALT 3
REGION135 chr5:502435-626896 ALT 1
REGION136 chr5:33800665-33963236 ALT 1
REGION137 chr5:125279466-125444151 ALT 1
REGION138 chr5:177865465-177996111 ALT 2
REGION139 chr6:65774814-65944033 ALT 1
REGION14 chr9:7428994-7577169 ALT 1
REGION140 chr6:68262879-68402208 ALT 1
REGION141 chr6:127654803-128521146 ALT 1
REGION142 chr6:166220580-166285980 ALT 1
REGION143 chr6:169724799-169919706 ALT 1
REGION144 chr6:170272763-170535221 ALT 1
REGION145 chr7:10001-198548 ALT 2
REGION146 chr7:76500982-76722751 ALT 1
REGION147 chr7:103086563-103242097 ALT 1
REGION148 chr7:148214874-148487860 ALT 1
REGION149 chr7:157697532-157820586 ALT 1
REGION15 chr9:88179047-88227980 ALT 1
REGION150 chr7:158267495-158477174 ALT 1
REGION151 chr8:718410-2817440 ALT 7
REGION152 chr8:57173351-57303398 ALT 1
REGION153 chr8:128554723-128925740 ALT 1
REGION154 chr8:141333447-141461079 ALT 1
REGION155 chr8:141766834-141800272 ALT 1
REGION156 chr8:143009713-143163398 ALT 1
REGION157 chr8:143509961-143828794 ALT 1
REGION158 chr8:144628750-144757761 ALT 1
REGION159 chr10:42103240-42298939 ALT 1
REGION16 chr10:27285655-27417608 ALT 1
REGION160 chr10:77761309-77931226 ALT 1
REGION161 chr12:123826509-123945954 ALT 1
REGION162 chr12:130323076-130394967 ALT 1
REGION163 chr12:131543020-131584984 ALT 1
REGION164 chr13:18698351-18884136 ALT 1
REGION165 chr13:25652362-25828680 ALT 1
REGION166 chr13:70341886-70442876 ALT 1
REGION167 chr13:89598964-89764093 ALT 1
REGION168 chr13:112182875-112505943 ALT 1
REGION169 chr13:113727531-113763795 ALT 1
REGION170 chr14:91535865-91854371 ALT 1
REGION171 chr14:105533003-106860219 ALT 1
REGION172 chr15:82289984-82641774 ALT 1
REGION173 chr16:1871895-1933852 ALT 1
REGION174 chr16:14427144-16998739 ALT 1
REGION175 chr17:71584518-71819311 ALT 1
REGION176 chr17:72833331-72935743 ALT 1
REGION177 chr18:43667277-43773892 ALT 1
REGION178 chr18:79563122-79725366 ALT 1
REGION179 chr20:61886306-62008187 ALT 1
REGION18 chr10:45175233-45468971 ALT 1
REGION180 chr20:64095055-64274842 ALT 1
REGION181 chr20:63414721-63471095 ALT 1
REGION182 chr21:17146893-17310433 ALT 1
REGION183 chr21:17603695-17744061 ALT 1
REGION184 chr22:23354043-23516062 ALT 1
REGION185 chr22:23763639-24013509 ALT 1
REGION186 chr22:36779214-36877704 ALT 1
REGION187 chrX:319338-601516 ALT 2
REGION188 chrX:79965154-80097082 ALT 1
REGION19 chr11:25170407-25319080 ALT 1
REGION2 chr1:153700531-153865738 ALT 1
REGION20 chr12:126227198-126405474 ALT 1
REGION21 chr12:27996034-28110778 ALT 1
REGION22 chr12:57932737-58092755 ALT 1
REGION23 chr12:58929265-59060870 ALT 1
REGION24 chr12:101111599-101258295 ALT 1
REGION25 chr15:27865714-32946929 ALT 2
REGION26 chr16:55772981-55968548 ALT 1
REGION28 chr17:70306278-70524219 ALT 1
REGION3 chr1:198370083-198725175 ALT 1
REGION30 chr17:77220730-77299326 ALT 1
REGION31 chr18:50292194-50574792 ALT 1
REGION32 chr18:51662936-51821642 ALT 1
REGION33 chr18:67423723-67552551 ALT 1
REGION34 chr18:72933122-73024781 ALT 1
REGION35 chr18:78493467-78664469 ALT 2
REGION36 chr18:78934886-79088997 ALT 2
REGION37 chr19:21648290-21809032 ALT 1
REGION38 chr19:34152260-34300950 ALT 1
REGION39 chr19:22120850-22300666 ALT 1
REGION4 chr2:36225959-36363315 ALT 1
REGION40 chr20:17771102-17893471 ALT 1
REGION41 chr21:14424141-14475471 ALT 1
REGION42 chr21:22102474-22296968 ALT 1
REGION43 chr21:32769079-32837937 ALT 1
REGION44 chr2:148934069-149024119 ALT 1
REGION5 chr3:151589366-151759498 ALT 1
REGION50 chr12:10001-173298 ALT 1
REGION6 chr4:34517955-34883858 ALT 1
REGION61 chr5:29036498-29254469 ALT 1
REGION7 chr4:155835378-155987264 ALT 1
REGION73 chr3:11815268-11986497 ALT 1
REGION8 chr5:162373667-162541648 ALT 1
REGION9 chr5:12681426-12744010 ALT 1
REGION99 chr6:168796076-168951646 ALT 1
SBNO2 chr19:1107414-1158195 ALT 1
SERPIN_REGION_1 chr14:104449322-104622880 ALT 1
SLC12A7 chr5:981494-1161361 ALT 1
SLC6A3 chr5:1318299-1509772 ALT 1
SMA chr5:69216819-71614443 ALT 2
SNTB2 chr16:69140151-69224690 ALT 1
SPATC1L chr21:46140942-46221322 ALT 1
SPC25 chr2:168830363-168937194 ALT 1
TMEM50B chr21:33405429-33512559 ALT 1
TRB chr7:142038121-143088503 ALT 1
TRIM69 chr15:44676664-44913053 ALT 1
UGT2B17 chr4:68306359-69010457 ALT 1
WDR81 chr17:1569973-1767739 ALT 1
ZNF66 chr19:20663141-21042381 ALT 1
General
Assembly nameGRCh38
Release date2013-12-24
Assembly typehaploid-with-alt-loci
Release typemajor
Assembly units37
Total bases3,209,286,105
Total non-N bases3,049,316,098
Primary assembly N5067,794,873
Regions
Total regions207
Regions with alternate loci178
Regions with FIX patches0
Regions with NOVEL patches0
Regions as PAR4
Alternate loci and patches
Alternate loci261
Alternate loci aligned to primary assembly261
FIX patches0
FIX patches aligned to primary assembly0
NOVEL patches0
NOVEL patches aligned to primary assembly0