Dnajc11 DnaJ heat shock protein family (Hsp40) member C11 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Dnajc11provided by RGD
Official Full Name: DnaJ heat shock protein family (Hsp40) member C11provided by RGD
Primary source: RGD:1307731
See related: Ensembl:ENSRNOG00000008802 AllianceGenome:RGD:1307731
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be involved in cristae formation. Predicted to be located in mitochondrial outer membrane and nuclear speck. Predicted to be part of MICOS complex and SAM complex. Orthologous to human DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Adrenal (RPKM 211.6), Heart (RPKM 170.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 5q36

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (167724776..167770032)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (162442042..162487966)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (169109907..169154725)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH130518 (e-PCR)
- UniSTS:213802

RH142055 (e-PCR)
- UniSTS:224045

RH138461 (e-PCR)
- UniSTS:220548

D5Uwm50 (e-PCR)
- UniSTS:240006

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in cristae formation	IBA Inferred from Biological aspect of Ancestor more info
involved_in cristae formation	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
part_of MICOS complex	ISO Inferred from Sequence Orthology more info
part_of SAM complex	ISO Inferred from Sequence Orthology more info
located_in mitochondrial outer membrane	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in nuclear speck	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: dnaJ homolog subfamily C member 11

Names: DnaJ (Hsp40) homolog, subfamily C, member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108694.2 → NP_001102164.1 dnaJ homolog subfamily C member 11

See identical proteins and their annotated locations for NP_001102164.1

Status: PROVISIONAL

Source sequence(s)

BC161936

UniProtKB/TrEMBL

A0A8I6AVF4, A6IUF7, B1WBY5, F7FAM6

Related

ENSRNOP00000011960.5, ENSRNOT00000011960.7

Conserved Domains (3) summary

pfam00226
Location:14 → 79

DnaJ; DnaJ domain

pfam06936
Location:372 → 447

Selenoprotein_S; Selenoprotein S (SelS)

pfam11875
Location:417 → 549

DUF3395; Domain of unknown function (DUF3395)