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Series GSE27419 Query DataSets for GSE27419
Status Public on Mar 07, 2012
Title Tiling array hybridizations of genomic DNA from Bacillus subtilis 168.
Organism Bacillus subtilis subsp. subtilis str. 168
Experiment type Other
Summary Genomic DNA prepared from B. subtilis 168 cells grown to stationary phase was hybridized to tiling arrays. The data are used in transcriptome studies to compute expression intensities from raw intensity data using a model of shift and drift
and correcting for probe affinity variations as described in (Nicolas et al., 2009, Bioinformatics 25, 2341-2347).
 
Overall design B. subtilis 168 was grown in LB medium to stationary phase. Genomic DNA was prepared from four independent cultures. After sonication, DNA was labeled with Cy3 and hybridized to tiling arrays.
 
Contributor(s) Mäder U, Dervyn E, Nicolas P
Citation(s) 22383849
Submission date Feb 18, 2011
Last update date Apr 07, 2014
Contact name Ulrike Mäder
E-mail ulrike.maeder@uni-greifswald.de
Organization name University Medicine Greifswald
Department Functional Genomics
Street address F.-L.-Jahn-Str. 15A
City Greifswald
ZIP/Postal code D-17489
Country Germany
 
Platforms (1)
GPL13168 BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2]
Samples (4)
GSM677884 gDNA_1
GSM677885 gDNA_2
GSM677886 gDNA_3
Relations
BioProject PRJNA137247

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27419_RAW.tar 76.4 Mb (http)(custom) TAR (of PAIR)
Raw data provided as supplementary file
Processed data included within Sample table

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