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Sample GSM99880 Query DataSets for GSM99880
Status Public on Sep 15, 2006
Title TCHW P22_ir29 salt stress, biological rep1
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt tolerant

Treatment protocol salt stressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 461.7 P
AFFX-BioB-M_at 469 P
AFFX-BioB-3_at 369.5 P
AFFX-BioC-5_at 1078.3 P
AFFX-BioC-3_at 1430.8 P
AFFX-BioDn-5_at 2835.5 P
AFFX-BioDn-3_at 5346 P
AFFX-CreX-5_at 15059.2 P
AFFX-CreX-3_at 20806.5 P
AFFX-DapX-5_at 1072.2 P
AFFX-DapX-M_at 2202 P
AFFX-DapX-3_at 2927.3 P
AFFX-LysX-5_at 101.7 P
AFFX-LysX-M_at 181.4 P
AFFX-LysX-3_at 523.9 P
AFFX-PheX-5_at 189.3 P
AFFX-PheX-M_at 215.4 P
AFFX-PheX-3_at 359 P
AFFX-ThrX-5_at 297.5 P
AFFX-ThrX-M_at 464.7 P

Total number of rows: 57381

Table truncated, full table size 1462 Kbytes.

Supplementary data files not provided

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