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Sample GSM99879 Query DataSets for GSM99879
Status Public on Sep 15, 2006
Title TCHW P21_ir29 control, biological rep3
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt tolerant

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 288.3 P
AFFX-BioB-M_at 374.6 P
AFFX-BioB-3_at 234.3 P
AFFX-BioC-5_at 860.2 P
AFFX-BioC-3_at 909.2 P
AFFX-BioDn-5_at 2013.4 P
AFFX-BioDn-3_at 3666.3 P
AFFX-CreX-5_at 11135.9 P
AFFX-CreX-3_at 13986.3 P
AFFX-DapX-5_at 396.9 P
AFFX-DapX-M_at 1315.6 P
AFFX-DapX-3_at 2178.2 P
AFFX-LysX-5_at 78.3 P
AFFX-LysX-M_at 175.3 M
AFFX-LysX-3_at 449.3 P
AFFX-PheX-5_at 106.3 P
AFFX-PheX-M_at 155.3 P
AFFX-PheX-3_at 286.9 P
AFFX-ThrX-5_at 125.6 P
AFFX-ThrX-M_at 248.4 P

Total number of rows: 57381

Table truncated, full table size 1462 Kbytes.

Supplementary data files not provided

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