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Sample GSM99878 Query DataSets for GSM99878
Status Public on Sep 15, 2006
Title TCHW P20_ir29 control, biological rep2
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt tolerant

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 366.9 P
AFFX-BioB-M_at 368.3 P
AFFX-BioB-3_at 304.4 P
AFFX-BioC-5_at 930.9 P
AFFX-BioC-3_at 1074.4 P
AFFX-BioDn-5_at 2252.8 P
AFFX-BioDn-3_at 4172.3 P
AFFX-CreX-5_at 13546.6 P
AFFX-CreX-3_at 18231.1 P
AFFX-DapX-5_at 1145.3 P
AFFX-DapX-M_at 2338 P
AFFX-DapX-3_at 2915.8 P
AFFX-LysX-5_at 112.7 P
AFFX-LysX-M_at 170.4 A
AFFX-LysX-3_at 461.2 P
AFFX-PheX-5_at 223.7 P
AFFX-PheX-M_at 269 P
AFFX-PheX-3_at 257.3 P
AFFX-ThrX-5_at 287.5 P
AFFX-ThrX-M_at 390.3 P

Total number of rows: 57381

Table truncated, full table size 1464 Kbytes.

Supplementary data files not provided

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