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Sample GSM99877 Query DataSets for GSM99877
Status Public on Sep 15, 2006
Title TCHW P19_ir29 control, biological rep1
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt tolerant

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 253 P
AFFX-BioB-M_at 271.4 P
AFFX-BioB-3_at 184.7 P
AFFX-BioC-5_at 646.8 P
AFFX-BioC-3_at 787.5 P
AFFX-BioDn-5_at 1585.7 P
AFFX-BioDn-3_at 2885.3 P
AFFX-CreX-5_at 8957.9 P
AFFX-CreX-3_at 11823.1 P
AFFX-DapX-5_at 1028.4 P
AFFX-DapX-M_at 1976.7 P
AFFX-DapX-3_at 2365.1 P
AFFX-LysX-5_at 116.9 P
AFFX-LysX-M_at 154.5 P
AFFX-LysX-3_at 414 P
AFFX-PheX-5_at 190.5 P
AFFX-PheX-M_at 269.4 P
AFFX-PheX-3_at 236.7 P
AFFX-ThrX-5_at 283.9 P
AFFX-ThrX-M_at 385.2 P

Total number of rows: 57381

Table truncated, full table size 1462 Kbytes.

Supplementary data files not provided

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