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Sample GSM99873 Query DataSets for GSM99873
Status Public on Sep 15, 2006
Title TCHW P16_agami salt stress, biological rep1
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt tolerant

Treatment protocol salt stressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 590.4 P
AFFX-BioB-M_at 611.3 P
AFFX-BioB-3_at 517.9 P
AFFX-BioC-5_at 1561.7 P
AFFX-BioC-3_at 1936.6 P
AFFX-BioDn-5_at 3791.1 P
AFFX-BioDn-3_at 6151.1 P
AFFX-CreX-5_at 21098.2 P
AFFX-CreX-3_at 26432.6 P
AFFX-DapX-5_at 873.5 P
AFFX-DapX-M_at 2035.5 P
AFFX-DapX-3_at 3089.6 P
AFFX-LysX-5_at 162.4 P
AFFX-LysX-M_at 271.7 P
AFFX-LysX-3_at 605 P
AFFX-PheX-5_at 254.9 P
AFFX-PheX-M_at 232.9 P
AFFX-PheX-3_at 303.9 P
AFFX-ThrX-5_at 220 P
AFFX-ThrX-M_at 372.1 P

Total number of rows: 57381

Table truncated, full table size 1464 Kbytes.

Supplementary data files not provided

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