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Sample GSM99871 Query DataSets for GSM99871
Status Public on Sep 15, 2006
Title TCHW P14_agami control, biological rep2
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt tolerant

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 411.5 P
AFFX-BioB-M_at 372 P
AFFX-BioB-3_at 265.3 P
AFFX-BioC-5_at 991.9 P
AFFX-BioC-3_at 1201.3 P
AFFX-BioDn-5_at 2367.4 P
AFFX-BioDn-3_at 5292.6 P
AFFX-CreX-5_at 13404.2 P
AFFX-CreX-3_at 17757.2 P
AFFX-DapX-5_at 758.5 P
AFFX-DapX-M_at 2000.1 P
AFFX-DapX-3_at 3149.2 P
AFFX-LysX-5_at 134.9 P
AFFX-LysX-M_at 218.6 P
AFFX-LysX-3_at 534.9 P
AFFX-PheX-5_at 215.7 P
AFFX-PheX-M_at 240.8 P
AFFX-PheX-3_at 270.9 P
AFFX-ThrX-5_at 288.9 P
AFFX-ThrX-M_at 415.3 P

Total number of rows: 57381

Table truncated, full table size 1465 Kbytes.

Supplementary data files not provided

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