GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM99870 Query DataSets for GSM99870
Status Public on Sep 15, 2006
Title TCHW P13_agami control, biological rep1
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt tolerant

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 370.2 P
AFFX-BioB-M_at 291.6 P
AFFX-BioB-3_at 216.8 P
AFFX-BioC-5_at 791.3 P
AFFX-BioC-3_at 898.3 P
AFFX-BioDn-5_at 1920.7 P
AFFX-BioDn-3_at 3779.8 P
AFFX-CreX-5_at 11716.8 P
AFFX-CreX-3_at 15707.2 P
AFFX-DapX-5_at 1235.3 P
AFFX-DapX-M_at 2114.5 P
AFFX-DapX-3_at 3497.5 P
AFFX-LysX-5_at 188.9 P
AFFX-LysX-M_at 259.9 P
AFFX-LysX-3_at 685.6 P
AFFX-PheX-5_at 300.5 P
AFFX-PheX-M_at 436.6 P
AFFX-PheX-3_at 361.8 P
AFFX-ThrX-5_at 299.1 P
AFFX-ThrX-M_at 540.1 P

Total number of rows: 57381

Table truncated, full table size 1464 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap