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Sample GSM99869 Query DataSets for GSM99869
Status Public on Sep 15, 2006
Title TCHW P12_ir29 salt stress, biological rep3
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt sensitive

Treatment protocol salt stressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 64.6 P 0.000509
AFFX-BioB-M_at 58.9 P 0.000044
AFFX-BioB-3_at 43.7 P 0.000044
AFFX-BioC-5_at 176 P 0.000052
AFFX-BioC-3_at 194.1 P 0.000044
AFFX-BioDn-5_at 369.1 P 0.000044
AFFX-BioDn-3_at 801.5 P 0.000044
AFFX-CreX-5_at 2160.6 P 0.000052
AFFX-CreX-3_at 3030.5 P 0.000044
AFFX-DapX-5_at 164.1 P 0.000052
AFFX-DapX-M_at 309.4 P 0.00007
AFFX-DapX-3_at 426.3 P 0.000044
AFFX-LysX-5_at 23.2 P 0.00007
AFFX-LysX-M_at 33.6 P 0.012547
AFFX-LysX-3_at 81.8 P 0.000044
AFFX-PheX-5_at 41.1 P 0.000147
AFFX-PheX-M_at 43.4 P 0.000052
AFFX-PheX-3_at 43.1 P 0.00007
AFFX-ThrX-5_at 49 P 0.000095
AFFX-ThrX-M_at 79.1 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1920 Kbytes.

Supplementary data files not provided

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