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Sample GSM99865 Query DataSets for GSM99865
Status Public on Sep 15, 2006
Title TCHW P8_ir29 control, biological rep2
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Indica Group
Characteristics salt sensitive

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 444.8 P
AFFX-BioB-M_at 620.3 P
AFFX-BioB-3_at 411.2 P
AFFX-BioC-5_at 1581.4 P
AFFX-BioC-3_at 1525.6 P
AFFX-BioDn-5_at 3282.7 P
AFFX-BioDn-3_at 6538 P
AFFX-CreX-5_at 19587.2 P
AFFX-CreX-3_at 24683.7 P
AFFX-DapX-5_at 850.9 P
AFFX-DapX-M_at 1706.6 P
AFFX-DapX-3_at 2337.7 P
AFFX-LysX-5_at 118.2 P
AFFX-LysX-M_at 223.9 P
AFFX-LysX-3_at 552.2 P
AFFX-PheX-5_at 238.2 P
AFFX-PheX-M_at 245.6 P
AFFX-PheX-3_at 267.9 P
AFFX-ThrX-5_at 267.5 P
AFFX-ThrX-M_at 429.8 P

Total number of rows: 57381

Table truncated, full table size 1462 Kbytes.

Supplementary data files not provided

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