GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM99862 Query DataSets for GSM99862
Status Public on Sep 15, 2006
Title TCHW P5_m103 salt stress, biological rep2
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt sensitive

Treatment protocol salt stressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 75.1 P 0.002556
AFFX-BioB-M_at 80.9 P 0.000095
AFFX-BioB-3_at 49.7 P 0.000044
AFFX-BioC-5_at 184 P 0.000044
AFFX-BioC-3_at 194.4 P 0.000044
AFFX-BioDn-5_at 402.5 P 0.000044
AFFX-BioDn-3_at 892.4 P 0.000044
AFFX-CreX-5_at 2381.8 P 0.000044
AFFX-CreX-3_at 3115.7 P 0.000044
AFFX-DapX-5_at 142 P 0.000044
AFFX-DapX-M_at 285.8 P 0.000095
AFFX-DapX-3_at 361 P 0.000044
AFFX-LysX-5_at 24.5 P 0.000095
AFFX-LysX-M_at 31.2 M 0.050229
AFFX-LysX-3_at 92 P 0.000052
AFFX-PheX-5_at 40.3 P 0.000081
AFFX-PheX-M_at 37.5 P 0.000147
AFFX-PheX-3_at 44 P 0.000044
AFFX-ThrX-5_at 46.3 P 0.00007
AFFX-ThrX-M_at 57 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1924 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap