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Sample GSM99861 Query DataSets for GSM99861
Status Public on Sep 15, 2006
Title TCHW P4_m103 salt stress, biological rep1
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt sensitive

Treatment protocol salt stressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 453.3 P
AFFX-BioB-M_at 456.8 P
AFFX-BioB-3_at 375.2 P
AFFX-BioC-5_at 1255.6 P
AFFX-BioC-3_at 1384.2 P
AFFX-BioDn-5_at 3025.4 P
AFFX-BioDn-3_at 5395.3 P
AFFX-CreX-5_at 16028 P
AFFX-CreX-3_at 21950.5 P
AFFX-DapX-5_at 959.5 P
AFFX-DapX-M_at 1621.1 P
AFFX-DapX-3_at 2412.4 P
AFFX-LysX-5_at 156.5 P
AFFX-LysX-M_at 239.2 P
AFFX-LysX-3_at 553.7 P
AFFX-PheX-5_at 238.2 P
AFFX-PheX-M_at 273.2 P
AFFX-PheX-3_at 242.3 P
AFFX-ThrX-5_at 233.2 P
AFFX-ThrX-M_at 419.7 P

Total number of rows: 57381

Table truncated, full table size 1464 Kbytes.

Supplementary data files not provided

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