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Sample GSM99859 Query DataSets for GSM99859
Status Public on Sep 15, 2006
Title TCHW P2_m103 control, biological rep2
Sample type RNA
Source name rice crown and growing point tissue
Organism Oryza sativa Japonica Group
Characteristics salt sensitive

Treatment protocol unstressed growth condition
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
Description Gene expression data from unstressed crown and growing point tissue of rice
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method
Submission date Mar 10, 2006
Last update date Mar 10, 2006
Phone 951-827-3808
Organization name University of California
Street address Department of Botany & Plant Sciecnes
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL2025
Series (1)
GSE4438 Expression data from rice under salinity stress

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 86 P 0.000662
AFFX-BioB-M_at 79.2 P 0.00007
AFFX-BioB-3_at 55.4 P 0.00006
AFFX-BioC-5_at 198.5 P 0.000044
AFFX-BioC-3_at 233.3 P 0.000044
AFFX-BioDn-5_at 467 P 0.000044
AFFX-BioDn-3_at 946.4 P 0.000044
AFFX-CreX-5_at 2629.1 P 0.000044
AFFX-CreX-3_at 3540.3 P 0.000044
AFFX-DapX-5_at 105.5 P 0.00007
AFFX-DapX-M_at 213 P 0.00011
AFFX-DapX-3_at 291.1 P 0.000052
AFFX-LysX-5_at 16.8 P 0.000147
AFFX-LysX-M_at 21 A 0.102165
AFFX-LysX-3_at 43 P 0.000044
AFFX-PheX-5_at 31.5 P 0.000044
AFFX-PheX-M_at 29.7 P 0.000662
AFFX-PheX-3_at 25.3 P 0.000662
AFFX-ThrX-5_at 30 P 0.000258
AFFX-ThrX-M_at 48.4 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1923 Kbytes.

Supplementary data files not provided

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