|
| Status |
Public on Aug 31, 2012 |
| Title |
PSU_RnaSeq_MEL_DMSO_2.0pct_single (superseded by GSE93476) |
| Sample type |
SRA |
| |
|
| Source name |
MEL
|
| Organism |
Mus musculus |
| Characteristics |
lab: PSU-m
lab description: Hardison - Penn State University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
treatment: DMSO_2.0pct
treatment description: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
labexpid: single
age: immortalized
age description: Immortal cells
labexpid: single
readtype: 1x45
readtype description: Single 45 nt reads
replicate: 1
strain: Unknown
strain description: Unknown strain origin
|
| Biomaterial provider |
Weissman lab
|
| Treatment protocol |
DMSO_2.0pct
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
****************************
GSM995526 record metadata submitted on Aug 31 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE93476
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
|
| |
|
| Submission date |
Aug 31, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE40522 |
ENCODE PSU Hardison RnaSeq |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| Reanalyzed by |
GSE80797 |
| Superseded by |
GSE93476 |
| SRA |
SRX181750 |
| BioSample |
SAMN01141820 |
| Named Annotation |
GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep1.bigWig |
| Named Annotation |
GSM995526_mm9_wgEncodePsuRnaSeqMelMImmortalUknR1x45Dm2p5dSigRep2.bigWig |
