|
| Status |
Public on Aug 17, 2012 |
| Title |
Blood from mouse model 10 of pancreatic cancer processed by EpCAM CTC-Chip |
| Sample type |
SRA |
| |
|
| Source name |
mouse pancreatic cancer model, blood, EpCAM CTC-Chip
|
| Organism |
Mus musculus |
| Characteristics |
background/strain: FVB
mouse model: MPANC 10
disease state: pancreatic cancer
tissue: blood
ChIP: EpCAM CTC-Chip
cell type: circulating tumor cell (CTC)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy MinElute kit followed by Helicos single-molecule sequencing. See Pubmed IDs 18388294, 20133332.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Helicos HeliScope |
| |
|
| Description |
MPANC_10.EpCAM
mRNA
Helicos Digital Gene Expression pipeline. See Pubmed ID 19581875.
|
| Data processing |
Helicos Digital Gene Expression pipeline. See Pubmed ID 19581875.
Genome_build: mm9
Supplementary_files_format_and_content: GSE40171_mouse_processed_data.txt: Tab-delimited text file of aligned read counts. Row names are UCSC known Gene transcript IDs or gene symbols, and column names are sample IDs. The 'GSE40171_mouse_processed_data.txt' file is linked to the Series record as a supplementary file.
|
| |
|
| Submission date |
Aug 16, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Ben S. Wittner |
| E-mail(s) |
wittner.ben@mgh.harvard.edu
|
| Organization name |
Massachusetts General Hospital
|
| Department |
Center for Cancer Research
|
| Lab |
Lawrence
|
| Street address |
149 13th Street
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02129 |
| Country |
USA |
| |
|
| Platform ID |
GPL14759 |
| Series (2) |
| GSE40171 |
RNA sequencing of circulating tumour cells implicates WNT signaling in pancreatic cancer metastasis (mouse data) |
| GSE40176 |
RNA sequencing of circulating tumour cells implicates WNT signaling in pancreatic cancer metastasis |
|
| Relations |
| SRA |
SRX178339 |
| BioSample |
SAMN01120316 |
