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Sample GSM981257

Query DataSets for GSM981257

Status

Public on Aug 07, 2012

Title

CSHL_RnaSeq_CD34+_Mobilized_cell_total (superseded by GSE78605)

Sample type

SRA

Source name

CD34+_Mobilized

Organism

Homo sapiens

Characteristics

datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: 043WC
labexpid: LID45901
labversion: iIDR
readtype: 2x101D
readtype description: Paired 101 nt directed reads
replicate: 1
spikeinpool: Nist14
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: 043WC
labexpid: LID45901
labversion: iIDR
readtype: 2x101D
readtype description: Paired 101 nt directed reads
spikeinpool: Nist14

Biomaterial provider

Dr. Heimfeld Lab at FHCRC

Extracted molecule

total RNA

Extraction protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina HiSeq 2000

Description

****************************
GSM981257 record metadata submitted on Aug 06 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE78605
****************************

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq

Submission date

Aug 06, 2012

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (2)

GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)

Relations

Superseded by

GSE78605

SRA

SRX174326

BioSample

SAMN01103827

Named Annotation

GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1.bigWig

Named Annotation

GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalContigs.bedRnaElements.gz	50.6 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalExonsDeNovo.gff.gz	12.0 Mb	(ftp)(http)	GFF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalExonsGencV10.gtf.gz	17.6 Mb	(ftp)(http)	GTF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalGeneDeNovo.gff.gz	4.5 Mb	(ftp)(http)	GFF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalGeneGencV10.gtf.gz	1.6 Mb	(ftp)(http)	GTF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalJunctions.bedRnaElements.gz	15.4 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalMinusRep1.bigWig	442.9 Mb	(ftp)(http)	BIGWIG
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalPlusRep1.bigWig	459.2 Mb	(ftp)(http)	BIGWIG
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalProtocolRep1V2.pdf.gz	394.3 Kb	(ftp)(http)	PDF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalSpikeinsRep1.spikeins.bam	423.2 Mb	(ftp)(http)	BAM
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalTranscriptDeNovo.gtf.gz	5.3 Mb	(ftp)(http)	GTF
GSM981257_hg19_wgEncodeCshlLongRnaSeqCd34mobilizedCellTotalTranscriptGencV10.gtf.gz	4.4 Mb	(ftp)(http)	GTF
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file