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Sample GSM975 Query DataSets for GSM975
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time3.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.8
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n43
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1528 1496 1935 4326 3606 774 720 569 2848 3416 2.369 0 .557 1.547 21 34 .537 .68 1.864 1.472 1.652 639 69 1 12 43 54 .557
2 1528 1488 3640 8222 7502 786 720 569 5924 6493 .952 0 .703 2.201 49 72 .485 .614 2.061 1.628 .698 462 69 1 12 53 64 .703
3 1536 1472 2573 6701 5970 804 731 577 4715 5292 2.617 0 .874 2.552 44 62 .431 .546 2.32 1.832 1.985 385 69 1 12 63 74 .874
4 1574 1544 430 1913 1193 794 720 569 942 1511 .908 0 1.132 2.077 24 42 .36 .456 2.774 2.191 1.674 385 69 1 12 73 84 1.132
5 1576 1616 4777 12376 11656 721 720 569 9205 9773 .937 0 .946 3.3 47 75 .41 .519 2.44 1.927 .969 385 69 1 12 83 94 .946
6 1616 1640 826 2034 1314 722 720 569 1038 1606 .92 0 .329 1.129 28 39 .629 .796 1.591 1.256 1.635 385 69 1 12 93 104 .329
7 1652 1656 664 1664 956 746 708 559 755 1314 .868 0 .185 1.265 27 44 .695 .88 1.44 1.137 1.128 381 69 1 12 103 114 .185
8 1674 1664 567 1285 565 769 720 569 446 1015 .853 0 -.346 1.038 30 59 1.004 1.271 .996 .787 .692 381 69 1 12 113 124 -.346
9 1699 1680 767 2201 1470 843 731 577 1161 1738 .858 0 .598 1.485 26 43 .522 .661 1.917 1.514 1.761 381 69 1 12 123 134 .598
10 1720 1696 1253 3159 2417 927 742 586 1909 2495 .92 0 .607 1.364 31 42 .518 .656 1.929 1.523 1.816 381 69 1 12 133 144 .607
11 1719 1688 1378 3585 2854 907 731 577 2254 2831 .89 0 .71 1.947 33 47 .483 .611 2.071 1.636 1.844 376 69 1 12 143 154 .71
12 1685 1656 1088 2807 2087 880 720 569 1648 2217 .889 0 .599 1.797 30 43 .521 .66 1.918 1.515 1.635 381 69 1 12 153 164 .599
13 1646 1600 480 1232 512 864 720 569 404 973 .816 0 -.248 1.233 15 23 .938 1.187 1.067 .842 1.234 390 69 1 12 163 174 -.248
14 1678 1584 1129 2967 2236 865 731 577 1766 2343 .902 0 .645 1.68 23 37 .505 .639 1.981 1.564 1.723 399 69 1 12 173 184 .645
15 1768 1584 2315 5274 4543 1092 731 577 3588 4165 .876 0 .632 1.806 36 47 .51 .645 1.962 1.55 .579 408 69 1 12 183 194 .632
16 1755 1568 2340 4542 3800 1104 742 586 3001 3587 .93 0 .359 1.881 33 40 .616 .78 1.624 1.282 .641 417 69 2 13 193 204 .359
17 1732 1536 824 2250 1519 1093 731 577 1200 1777 .921 0 .542 1.487 28 36 .542 .687 1.843 1.456 1.887 417 69 2 13 203 214 .542
18 1804 1520 179 824 93 991 731 577 73 651 .771 0 -1.285 .696 10 7 1.925 2.437 .52 .41 .452 417 69 2 13 213 224 -1.285
19 1680 1504 36972 1963 1243 780 720 569 982 1550 0 0 -5.235 .038 79 59 29.744 37.665 .034 .027 0 417 69 2 13 223 234 -5.235
20 1657 1480 2797 11739 11031 779 708 559 8711 9270 .912 0 1.639 3.436 62 76 .254 .321 3.944 3.114 4.908 417 69 2 13 233 244 1.639

Total number of rows: 7680

Table truncated, full table size 967 Kbytes.




Supplementary data files not provided
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