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Sample GSM973 Query DataSets for GSM973
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time2.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.6
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n76
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 571 544 824 2320 1227 1110 1093 1051 1180 2231 .942 0 .518 1.56 31 24 .672 .698 1.489 1.432 1.502 812 69 5 15 42 52 .518
2 586 544 440 1742 649 1110 1093 1051 624 1675 .896 0 .504 1.055 34 21 .678 .705 1.475 1.418 1.491 635 69 5 15 52 62 .504
3 635 544 860 2210 1117 1174 1093 1051 1074 2125 .945 0 .321 1.032 39 30 .77 .801 1.299 1.249 1.394 554 69 5 15 62 72 .321
4 632 544 133 1297 178 1208 1119 1076 171 1247 .727 0 .363 2.105 17 5 .747 .778 1.338 1.286 .722 554 69 5 15 72 82 .363
5 600 536 1070 4276 3165 1180 1111 1068 3044 4112 .94 0 1.508 3.021 68 85 .338 .352 2.958 2.845 2.575 545 69 5 15 82 92 1.508
6 591 536 126 1260 149 1183 1111 1068 144 1212 .703 0 .193 1.409 15 10 .846 .875 1.183 1.143 .787 545 69 5 15 92 102 .193
7 593 528 220 1057 1166 1084 1042 1016 .681 0 .423 31 2 .492 540 69 5 15 102 112
8 597 536 329 1282 180 1197 1102 1060 173 1233 .763 0 -.927 .948 37 14 1.828 1.902 .547 .526 .923 540 69 5 15 112 122 -.927
9 664 544 73 1238 119 1275 1119 1076 114 1190 .31 0 .643 3.222 5 2 .613 .64 1.63 1.562 .581 540 69 5 15 122 132 .643
10 700 536 124 1308 180 1302 1128 1085 173 1258 .398 0 .48 1.948 14 4 .689 .717 1.452 1.395 .461 540 69 5 15 132 142 .48
11 667 544 101 1160 1303 1182 1137 1115 .541 0 1.214 15 0 .666 540 69 5 15 142 152
12 645 536 99 1263 99 1257 1164 1119 95 1214 .452 0 -.06 1.5 10 5 1 1.042 1 .96 .707 540 69 5 15 152 162 -.06
13 600 544 15 1146 1260 1208 1162 1102 .286 0 1.125 1 0 .483 540 69 5 15 162 172
14 649 552 149 1502 214 1395 1288 1238 206 1444 .806 0 .467 1.67 10 7 .696 .723 1.436 1.383 1.154 540 69 5 15 172 182 .467
15 671 560 1422 3391 2067 1433 1324 1273 1988 3261 .956 0 .483 1.435 36 30 .688 .715 1.454 1.398 1.604 540 69 5 15 182 192 .483
16 727 576 696 2344 949 1546 1395 1341 913 2254 .942 0 .392 .999 31 17 .733 .762 1.364 1.312 1.383 540 69 5 15 192 202 .392
17 1018 592 28 1382 1583 1431 1376 1329 .198 0 1.258 4 0 .351 540 69 5 15 202 212
18 1107 592 1117 1461 1386 1333 1074 .362 0 3.846 0 0 1.817 540 69 5 15 212 222
19 1078 584 25367 1602 260 1416 1342 1290 250 1540 0 0 -6.665 .029 82 13 97.565 101.468 .01 .01 0 540 69 5 15 222 232 -6.665
20 1028 560 400 2849 1578 1320 1271 1222 1517 2739 .649 0 1.923 3.066 42 52 .253 .264 3.945 3.793 3.446 540 69 5 15 232 242 1.923

Total number of rows: 7680

Table truncated, full table size 942 Kbytes.




Supplementary data files not provided
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