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Sample GSM970874 Query DataSets for GSM970874
Status Public on Jul 20, 2012
Title UW_RnaSeq_WholeBrain_E14.5_C57BL/6
Sample type SRA
Source name WholeBrain
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: WholeBrain
cell organism: mouse
cell description: Whole Brain
cell sex: M
age: E14.5
age description: Embryonic day 14.5
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: E14.5
age description: Embryonic day 14.5
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179473
BioSample SAMN01121064
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6MinusRawRep1.bigWig
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6MinusRawRep2.bigWig
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6PlusRawRep1.bigWig
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6PlusRawRep2.bigWig
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6SigRep1.bigWig
Named Annotation GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6MinusRawRep1.bigWig 92.9 Mb (ftp)(http) BIGWIG
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6MinusRawRep2.bigWig 78.3 Mb (ftp)(http) BIGWIG
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6PlusRawRep1.bigWig 85.8 Mb (ftp)(http) BIGWIG
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6PlusRawRep2.bigWig 72.4 Mb (ftp)(http) BIGWIG
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6SigRep1.bigWig 163.6 Mb (ftp)(http) BIGWIG
GSM970874_mm9_wgEncodeUwRnaSeqWbrainCellPolyaME14halfC57bl6SigRep2.bigWig 139.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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