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Sample GSM970872 Query DataSets for GSM970872
Status Public on Jul 20, 2012
Title UW_RnaSeq_MEL_adult-8wks_Unknown
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: Unknown
strain description: Unknown strain origin
age: adult-8wks
age description: Adult 8 weeks
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Growth protocol MEL_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179471
BioSample SAMN01121062
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep2.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep2.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep1.bigWig
Named Annotation GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep1.bigWig 73.2 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknMinusRawRep2.bigWig 55.0 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep1.bigWig 65.0 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknPlusRawRep2.bigWig 47.7 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep1.bigWig 126.8 Mb (ftp)(http) BIGWIG
GSM970872_mm9_wgEncodeUwRnaSeqMelCellPolyaMImmortalUknSigRep2.bigWig 94.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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