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Sample GSM970866 Query DataSets for GSM970866
Status Public on Jul 20, 2012
Title UW_RnaSeq_Patski_immortalized_Spretus.BL6-Xist
Sample type SRA
 
Source name Patski
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Patski
cell organism: mouse
cell description: Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.
cell sex: F
age: immortalized
age description: Immortal cells
strain: Spretus.BL6-Xist
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
Biomaterial provider Dr. Christine Disteche (University of Washington)
Growth protocol Patski_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179465
BioSample SAMN01121056
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep2.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep2.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep1.bigWig 34.4 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep2.bigWig 66.6 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep1.bigWig 32.1 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep2.bigWig 75.1 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep1.bigWig 76.6 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep2.bigWig 150.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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