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Sample GSM970866 Query DataSets for GSM970866
Status Public on Jul 20, 2012
Title UW_RnaSeq_Patski_immortalized_Spretus.BL6-Xist
Sample type SRA
Source name Patski
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Patski
cell organism: mouse
cell description: Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.
cell sex: F
age: immortalized
age description: Immortal cells
strain: Spretus.BL6-Xist
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
Biomaterial provider Dr. Christine Disteche (University of Washington)
Growth protocol Patski_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179465
BioSample SAMN01121056
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep2.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep2.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep1.bigWig
Named Annotation GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep1.bigWig 34.4 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6MinusRawRep2.bigWig 66.6 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep1.bigWig 32.1 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6PlusRawRep2.bigWig 75.1 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep1.bigWig 76.6 Mb (ftp)(http) BIGWIG
GSM970866_mm9_wgEncodeUwRnaSeqPatskiCellPolyaFImmortalSpbl6SigRep2.bigWig 150.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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