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Sample GSM970863 Query DataSets for GSM970863
Status Public on Jul 20, 2012
Title UW_RnaSeq_LgIntestine_adult-8wks_C57BL/6
Sample type SRA
Source name LgIntestine
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: LgIntestine
cell organism: mouse
cell description: Large Intestine
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol LargeIntestine_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179462
BioSample SAMN01121053
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6MinusRawRep1.bigWig
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6MinusRawRep2.bigWig
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6PlusRawRep1.bigWig
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6PlusRawRep2.bigWig
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6SigRep1.bigWig
Named Annotation GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6MinusRawRep1.bigWig 65.7 Mb (ftp)(http) BIGWIG
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6MinusRawRep2.bigWig 141.6 Mb (ftp)(http) BIGWIG
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6PlusRawRep1.bigWig 57.4 Mb (ftp)(http) BIGWIG
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6PlusRawRep2.bigWig 126.7 Mb (ftp)(http) BIGWIG
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6SigRep1.bigWig 115.0 Mb (ftp)(http) BIGWIG
GSM970863_mm9_wgEncodeUwRnaSeqLgintCellPolyaMAdult8wksC57bl6SigRep2.bigWig 312.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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