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Sample GSM970859 Query DataSets for GSM970859
Status Public on Jul 20, 2012
Title UW_RnaSeq_HeadlessEmbryo_E11.5_CD-1
Sample type SRA
 
Source name HeadlessEmbryo
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: HeadlessEmbryo
cell organism: mouse
cell description: Whole embryos with heads removed
cell sex: M
age: E11.5
age description: Embryonic day 11.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E11.5
age description: Embryonic day 11.5
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Selleri lab, Cornell
Growth protocol HeadlessEmbryo_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179458
BioSample SAMN01121049
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1MinusRawRep1.bigWig
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1PlusRawRep1.bigWig
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1SigRep1.bigWig

Supplementary file Size Download File type/resource
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1MinusRawRep1.bigWig 83.3 Mb (ftp)(http) BIGWIG
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1PlusRawRep1.bigWig 77.4 Mb (ftp)(http) BIGWIG
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1SigRep1.bigWig 146.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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