GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM970859 Query DataSets for GSM970859
Status Public on Jul 20, 2012
Title UW_RnaSeq_HeadlessEmbryo_E11.5_CD-1
Sample type SRA
Source name HeadlessEmbryo
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: HeadlessEmbryo
cell organism: mouse
cell description: Whole embryos with heads removed
cell sex: M
age: E11.5
age description: Embryonic day 11.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E11.5
age description: Embryonic day 11.5
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Selleri lab, Cornell
Growth protocol HeadlessEmbryo_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179458
BioSample SAMN01121049
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1MinusRawRep1.bigWig
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1PlusRawRep1.bigWig
Named Annotation GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1SigRep1.bigWig

Supplementary file Size Download File type/resource
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1MinusRawRep1.bigWig 83.3 Mb (ftp)(http) BIGWIG
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1PlusRawRep1.bigWig 77.4 Mb (ftp)(http) BIGWIG
GSM970859_mm9_wgEncodeUwRnaSeqHlembryoCellPolyaME11halfCd1SigRep1.bigWig 146.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap