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Sample GSM970855 Query DataSets for GSM970855
Status Public on Jul 20, 2012
Title UW_RnaSeq_416B_immortalized_B6D2F1/J
Sample type SRA
 
Source name 416B
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: 416B
cell organism: mouse
cell description: myeloid progenitor cells, CD34+
cell sex: M
age: immortalized
age description: Immortal cells
strain: B6D2F1/J
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
Biomaterial provider Stam lab
Growth protocol 416B_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179454
BioSample SAMN01121045
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep2.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep2.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep1.bigWig 52.4 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep2.bigWig 55.9 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep1.bigWig 47.9 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep2.bigWig 51.1 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep1.bigWig 91.3 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep2.bigWig 97.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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