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Sample GSM970855 Query DataSets for GSM970855
Status Public on Jul 20, 2012
Title UW_RnaSeq_416B_immortalized_B6D2F1/J
Sample type SRA
Source name 416B
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: 416B
cell organism: mouse
cell description: myeloid progenitor cells, CD34+
cell sex: M
age: immortalized
age description: Immortal cells
strain: B6D2F1/J
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
Biomaterial provider Stam lab
Growth protocol 416B_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179454
BioSample SAMN01121045
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep2.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep2.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep1.bigWig
Named Annotation GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep1.bigWig 52.4 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jMinusRawRep2.bigWig 55.9 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep1.bigWig 47.9 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jPlusRawRep2.bigWig 51.1 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep1.bigWig 91.3 Mb (ftp)(http) BIGWIG
GSM970855_mm9_wgEncodeUwRnaSeq416bCellPolyaMImmortalB6d2f1jSigRep2.bigWig 97.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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