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Sample GSM970854 Query DataSets for GSM970854
Status Public on Jul 20, 2012
Title UW_RnaSeq_A20_immortalized_BALB/cAnN
Sample type SRA
 
Source name A20
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: A20
cell organism: mouse
cell description: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm
cell sex: M
age: immortalized
age description: Immortal cells
strain: BALB/cAnN
strain description: ccMyeloma high incidence H2d
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: ccMyeloma high incidence H2d
Biomaterial provider ATCC
Growth protocol A20_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwRnaSeq
 
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX179453
BioSample SAMN01121044
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep2.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep2.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep1.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep2.bigWig 58.9 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep1.bigWig 58.0 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep2.bigWig 50.8 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep1.bigWig 113.1 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep2.bigWig 103.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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