GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM970854 Query DataSets for GSM970854
Status Public on Jul 20, 2012
Title UW_RnaSeq_A20_immortalized_BALB/cAnN
Sample type SRA
Source name A20
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: A20
cell organism: mouse
cell description: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm
cell sex: M
age: immortalized
age description: Immortal cells
strain: BALB/cAnN
strain description: ccMyeloma high incidence H2d
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: ccMyeloma high incidence H2d
Biomaterial provider ATCC
Growth protocol A20_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX179453
BioSample SAMN01121044
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep2.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep2.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep1.bigWig
Named Annotation GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep1.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannMinusRawRep2.bigWig 58.9 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep1.bigWig 58.0 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannPlusRawRep2.bigWig 50.8 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep1.bigWig 113.1 Mb (ftp)(http) BIGWIG
GSM970854_mm9_wgEncodeUwRnaSeqA20CellPolyaMImmortalBalbcannSigRep2.bigWig 103.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap