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Sample GSM970853 Query DataSets for GSM970853
Status Public on Jul 20, 2012
Title UW_RnaSeq_NIH-3T3_immortalized_NIH/Swiss
Sample type SRA
Source name NIH-3T3
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: NIH-3T3
cell organism: mouse
cell description: fibroblast
cell sex: M
age: immortalized
age description: Immortal cells
strain: NIH/Swiss
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
age: immortalized
age description: Immortal cells
labversion: coverage
readtype: 1x50
readtype description: Single 50 nt reads
replicate: 1
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
Biomaterial provider ATCC
Growth protocol NIH-3T3_Stam_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System
Data processing
Submission date Jul 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10010
Series (2)
GSE39524 RNA-seq from ENCODE/UW
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Reanalyzed by GSE80793
SRA SRX179452
BioSample SAMN01121043
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep2.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep2.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep1.bigWig
Named Annotation GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep1.bigWig 61.6 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsMinusRawRep2.bigWig 64.1 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep1.bigWig 56.2 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsPlusRawRep2.bigWig 58.2 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep1.bigWig 108.9 Mb (ftp)(http) BIGWIG
GSM970853_mm9_wgEncodeUwRnaSeqNih3t3CellPolyaMImmortalNihsSigRep2.bigWig 113.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data not provided for this record
Raw data are available in SRA

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