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GEO help: Mouse over screen elements for information. |
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Status |
Public on Jul 19, 2012 |
Title |
UW_5C_LNCaP_UW-5C-Myc-Region |
Sample type |
SRA |
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Source name |
LNCaP
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Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: 5C datatype description: 5C Chromatin Interactions cell: LNCaP cell organism: human cell description: prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.) cell karyotype: cancer cell lineage: endoderm cell sex: M region: UW-5C-Myc-Region region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929) region: UW-5C-Myc-Region region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929) replicate: 1
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Biomaterial provider |
ATCC
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Growth protocol |
LNCaP_Stam_protocol.pdf
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C library_strategy: 5C (Chromatin Conformation Capture Carbon Copy)
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Library strategy |
OTHER |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina Genome Analyzer |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
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Submission date |
Jul 19, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (1) |
GSE39505 |
Chromatin Interactions by 5C from ENCODE/University of Washington |
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Relations |
SRA |
SRX160854 |
BioSample |
SAMN01091722 |
Supplementary file |
Size |
Download |
File type/resource |
GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep1.matrix.tar.gz |
64.7 Kb |
(ftp)(http) |
TAR |
GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep2.matrix.tar.gz |
60.7 Kb |
(ftp)(http) |
TAR |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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