 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jul 19, 2012 |
| Title |
UW_5C_LNCaP_UW-5C-Myc-Region |
| Sample type |
SRA |
| |
|
| Source name |
LNCaP
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: 5C
datatype description: 5C Chromatin Interactions
cell: LNCaP
cell organism: human
cell description: prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
region: UW-5C-Myc-Region
region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929)
region: UW-5C-Myc-Region
region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929)
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
LNCaP_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
library_strategy: 5C (Chromatin Conformation Capture Carbon Copy)
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
|
| |
|
| Submission date |
Jul 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE39505 |
Chromatin Interactions by 5C from ENCODE/University of Washington |
|
| Relations |
| SRA |
SRX160854 |
| BioSample |
SAMN01091722 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep1.matrix.tar.gz |
64.7 Kb |
(ftp)(http) |
TAR |
| GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep2.matrix.tar.gz |
60.7 Kb |
(ftp)(http) |
TAR |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
