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Sample GSM970286 Query DataSets for GSM970286
Status Public on Jul 19, 2012
Title UW_5C_LNCaP_UW-5C-Myc-Region
Sample type SRA
 
Source name LNCaP
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: 5C
datatype description: 5C Chromatin Interactions
cell: LNCaP
cell organism: human
cell description: prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
region: UW-5C-Myc-Region
region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929)
region: UW-5C-Myc-Region
region description: Myc upstream gene desert region used in UW 5C experiments (hg19 chr8:126445818-130737929)
replicate: 1
Biomaterial provider ATCC
Growth protocol LNCaP_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
library_strategy: 5C (Chromatin Conformation Capture Carbon Copy)
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
 
Submission date Jul 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE39505 Chromatin Interactions by 5C from ENCODE/University of Washington
Relations
SRA SRX160854
BioSample SAMN01091722

Supplementary file Size Download File type/resource
GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep1.matrix.tar.gz 64.7 Kb (ftp)(http) TAR
GSM970286_hg19_wgEncodeUw5CLncapUw5cmycMatrixRep2.matrix.tar.gz 60.7 Kb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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