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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 19, 2012 |
| Title |
UW_5C_SK-N-SH_RA_UW-5C-Gene-Regions |
| Sample type |
SRA |
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| Source name |
SK-N-SH_RA
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| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: 5C
datatype description: 5C Chromatin Interactions
cell: SK-N-SH_RA
cell organism: human
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
region: UW-5C-Gene-Regions
region description: Set of 25 regions interrogated in UW 5C gene-targeted experiments
region: UW-5C-Gene-Regions
region description: Set of 25 regions interrogated in UW 5C gene-targeted experiments
replicate: 1
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| Biomaterial provider |
ATCC
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| Growth protocol |
Stam_15_protocols.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
library_strategy: 5C (Chromatin Conformation Capture Carbon Copy)
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUw5C
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| Submission date |
Jul 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE39505 |
Chromatin Interactions by 5C from ENCODE/University of Washington |
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| Relations |
| SRA |
SRX160852 |
| BioSample |
SAMN01091720 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM970284_hg19_wgEncodeUw5CSknshraUw5cgeneMatrixRep1.matrix.tar.gz |
156.9 Kb |
(ftp)(http) |
TAR |
| GSM970284_hg19_wgEncodeUw5CSknshraUw5cgeneMatrixRep2.matrix.tar.gz |
125.9 Kb |
(ftp)(http) |
TAR |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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