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Sample GSM946548 Query DataSets for GSM946548
Status Public on Jun 11, 2012
Title PSU_ChipSeq_CH12_H3K9me3
Sample type SRA
 
Source name CH12
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K9me3
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: Abcam
antibody vendorid: ab8898
age: immortalized
age description: Immortal cells
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM001923
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX153188
BioSample SAMN01047991
Named Annotation GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepSignalRep1.bigWig
Named Annotation GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepSignalRep2.bigWig
Named Annotation GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputSig.bigWig

Supplementary file Size Download File type/resource
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputPk.broadPeak.gz 1.9 Mb (ftp)(http) BROADPEAK
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepPeaksRep1.broadPeak.gz 1.7 Mb (ftp)(http) BROADPEAK
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepPeaksRep2.broadPeak.gz 1.5 Mb (ftp)(http) BROADPEAK
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepSignalRep1.bigWig 5.3 Gb (ftp)(http) BIGWIG
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputRepSignalRep2.bigWig 5.5 Gb (ftp)(http) BIGWIG
GSM946548_mm9_wgEncodePsuHistoneCh12H3k09me3FImmortal2a4bInputSig.bigWig 6.0 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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