|
| Status |
Public on Jun 11, 2012 |
| Title |
PSU_ChipSeq_Erythrobl_H3K27me3 |
| Sample type |
SRA |
| |
|
| Source name |
Erythrobl
|
| Organism |
Mus musculus |
| Characteristics |
lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Erythrobl
cell organism: mouse
cell description: Erythroblast, ter119+ cells from liver
cell sex: B
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
age: E14.5
age description: Embryonic day 14.5
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM002350
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
|
| Biomaterial provider |
Mitch Weiss lab
|
| Growth protocol |
Erythroblast__Hardison_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
|
| |
|
| Submission date |
Jun 11, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (4)
|
| GSE36028 |
Histone Modifications by ChIP-seq from ENCODE/PSU |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51337 |
Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis |
| GSE51338 |
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis |
|
| Relations |
| Reanalyzed by |
GSE59801 |
| SRA |
SRX153187 |
| BioSample |
SAMN01047990 |
| Named Annotation |
GSM946547_mm9_wgEncodePsuHistoneErythroblH3k27me3BE14halfCd1InputRepSignalRep1.bigWig |
| Named Annotation |
GSM946547_mm9_wgEncodePsuHistoneErythroblH3k27me3BE14halfCd1InputRepSignalRep2.bigWig |
| Named Annotation |
GSM946547_mm9_wgEncodePsuHistoneErythroblH3k27me3BE14halfCd1InputSig.bigWig |
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