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Sample GSM946540 Query DataSets for GSM946540
Status Public on Jun 11, 2012
Title PSU_ChipSeq_Megakaryo_H3K36me3
Sample type SRA
 
Source name Megakaryo
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Megakaryo
cell organism: mouse
cell description: Megakaryocyte
cell sex: B
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
age: E14.5
age description: Embryonic day 14.5
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM002352
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Mitch Weiss lab
Growth protocol Megakaryocyte_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
 
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (4)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51337 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
Relations
SRA SRX153180
BioSample SAMN01047983
Named Annotation GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepSignalRep1.bigWig
Named Annotation GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepSignalRep2.bigWig
Named Annotation GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputSig.bigWig

Supplementary file Size Download File type/resource
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputPk.broadPeak.gz 603.6 Kb (ftp)(http) BROADPEAK
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepPeaksRep1.broadPeak.gz 524.9 Kb (ftp)(http) BROADPEAK
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepPeaksRep2.broadPeak.gz 635.4 Kb (ftp)(http) BROADPEAK
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepSignalRep1.bigWig 4.7 Gb (ftp)(http) BIGWIG
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputRepSignalRep2.bigWig 5.0 Gb (ftp)(http) BIGWIG
GSM946540_mm9_wgEncodePsuHistoneMegakaryoH3k36me3BE14halfCd1InputSig.bigWig 5.6 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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