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GEO accession:
Sample GSM946536
Query DataSets for GSM946536
Status
Public on Jun 11, 2012
Title
PSU_ChipSeq_Erythrobl_H3K4me1
Sample type
SRA
Source name
Erythrobl
Organism
Mus musculus
Characteristics
lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Erythrobl
cell organism: mouse
cell description: Erythroblast, ter119+ cells from liver
cell sex: B
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: E14.5
age description: Embryonic day 14.5
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM002350
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider
Mitch Weiss lab
Growth protocol
Erythroblast__Hardison_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
Submission date
Jun 11, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (4)
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GSE36028
Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847
A comparative encyclopedia of DNA elements in the mouse genome
GSE51337
Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
GSE51338
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Relations
Reanalyzed by
GSE59801
SRA
SRX153176
BioSample
SAMN01047979
Named Annotation
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepSignalRep1.bigWig
Named Annotation
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepSignalRep2.bigWig
Named Annotation
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputPk.broadPeak.gz
1.0 Mb
(ftp)
(http)
BROADPEAK
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepPeaksRep1.broadPeak.gz
867.1 Kb
(ftp)
(http)
BROADPEAK
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepPeaksRep2.broadPeak.gz
972.6 Kb
(ftp)
(http)
BROADPEAK
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepSignalRep1.bigWig
5.3 Gb
(ftp)
(http)
BIGWIG
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputRepSignalRep2.bigWig
5.3 Gb
(ftp)
(http)
BIGWIG
GSM946536_mm9_wgEncodePsuHistoneErythroblH3k04me1BE14halfCd1InputSig.bigWig
5.9 Gb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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