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Sample GSM945855 Query DataSets for GSM945855
Status Public on Jun 08, 2012
Title USC_ChipSeq_HCT-116_Input_UCDavis (superseded by GSE86662)
Sample type SRA
Source name HCT-116
Organism Homo sapiens
Characteristics lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HCT-116
cell organism: human
cell description: colorectal carcinoma (PMID: 7214343)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH000627
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HCT-116_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Description ****************************
GSM945855 record metadata submitted on Jun 08 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE86662
Data processing
Submission date Jun 08, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE31755 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/Davis/Harvard
Reanalyzed by GSE58638
Superseded by GSE86662
SRA SRX152076
BioSample SAMN01041456
Named Annotation GSM945855_hg19_wgEncodeSydhHistoneHct116InputUcdSig.bigWig

Supplementary file Size Download File type/resource
GSM945855_hg19_wgEncodeSydhHistoneHct116InputUcdSig.bigWig 301.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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