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Sample GSM945853 Query DataSets for GSM945853
Status Public on Jun 08, 2012
Title USC_ChipSeq_HCT-116_H3K27ac_UCDavis
Sample type SRA
Source name HCT-116
Organism Homo sapiens
Characteristics lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HCT-116
cell organism: human
cell description: colorectal carcinoma (PMID: 7214343)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: H3K27ac
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27ac
antibody targetdescription: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: Abcam
antibody vendorid: ab4729
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH000627
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HCT-116_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 08, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE31755 Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/Davis/Harvard
SRA SRX152074
BioSample SAMN01041454
Named Annotation GSM945853_hg19_wgEncodeSydhHistoneHct116H3k27acUcdSig.bigWig

Supplementary file Size Download File type/resource
GSM945853_hg19_wgEncodeSydhHistoneHct116H3k27acUcdPk.narrowPeak.gz 432.6 Kb (ftp)(http) NARROWPEAK
GSM945853_hg19_wgEncodeSydhHistoneHct116H3k27acUcdSig.bigWig 136.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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