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Sample GSM945322 Query DataSets for GSM945322
Status Public on Jun 07, 2012
Title UW_ChipSeq_H7-hESC_H3K4me3_diffProtA_5d
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics donor_id: ENCDO221AAA
biomaterial_type: in vitro differentiated cells
cell_type: cardiac mesoderm
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: diffProtA_5d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002544
labexpid: DS13777
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider WiCell
Treatment protocol diffProtA_5d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190105
BioSample SAMN01731584
Named Annotation GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep1.bigWig
Named Annotation GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep1.broadPeak.gz 692.2 Kb (ftp)(http) BROADPEAK
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dHotspotsRep2.broadPeak.gz 851.2 Kb (ftp)(http) BROADPEAK
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep1.narrowPeak.gz 780.9 Kb (ftp)(http) NARROWPEAK
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dPkRep2.narrowPeak.gz 698.4 Kb (ftp)(http) NARROWPEAK
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep1.bigWig 37.9 Mb (ftp)(http) BIGWIG
GSM945322_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa5dRawRep2.bigWig 69.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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