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Sample GSM945320 Query DataSets for GSM945320
Status Public on Jun 07, 2012
Title UW_ChipSeq_H7-hESC_H3K27me3_diffProtA_14d
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
treatment: diffProtA_14d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002532
labexpid: DS14649
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider WiCell
Treatment protocol diffProtA_14d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190103
BioSample SAMN01731582
Named Annotation GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep1.bigWig
Named Annotation GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep1.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dHotspotsRep2.broadPeak.gz 5.4 Mb (ftp)(http) BROADPEAK
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep1.narrowPeak.gz 1008.1 Kb (ftp)(http) NARROWPEAK
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dPkRep2.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep1.bigWig 142.3 Mb (ftp)(http) BIGWIG
GSM945320_hg19_wgEncodeUwHistoneH7esH3k27me3StdDiffa14dRawRep2.bigWig 137.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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