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Sample GSM945315 Query DataSets for GSM945315
Status Public on Jun 07, 2012
Title UW_ChipSeq_H7-hESC_H3K36me3_diffProtA_2d
Sample type SRA
Source name H7-hESC
Organism Homo sapiens
Characteristics donor_id: ENCDO221AAA
biomaterial_type: in vitro differentiated cells
cell_type: cardiac mesoderm
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: diffProtA_2d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002543
labexpid: DS15385
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider WiCell
Treatment protocol diffProtA_2d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190098
BioSample SAMN01731577
Named Annotation GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep1.bigWig
Named Annotation GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep1.broadPeak.gz 5.5 Mb (ftp)(http) BROADPEAK
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dHotspotsRep2.broadPeak.gz 5.8 Mb (ftp)(http) BROADPEAK
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep1.narrowPeak.gz 1008.3 Kb (ftp)(http) NARROWPEAK
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dPkRep2.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep1.bigWig 131.4 Mb (ftp)(http) BIGWIG
GSM945315_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa2dRawRep2.bigWig 163.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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