NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM945310 Query DataSets for GSM945310
Status Public on Jun 07, 2012
Title UW_ChipSeq_HCFaa_H3K4me3
Sample type SRA
 
Source name HCFaa
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HCFaa
cell organism: human
cell description: cardiac fibroblasts- adult atrial
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000944
labexpid: DS15754
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ScienCell
Treatment protocol None
Growth protocol HCFaa_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX190093
BioSample SAMN01731572
Named Annotation GSM945310_hg19_wgEncodeUwHistoneHcfaaH3k4me3StdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM945310_hg19_wgEncodeUwHistoneHcfaaH3k4me3StdHotspotsRep1.broadPeak.gz 720.4 Kb (ftp)(http) BROADPEAK
GSM945310_hg19_wgEncodeUwHistoneHcfaaH3k4me3StdPkRep1.narrowPeak.gz 701.8 Kb (ftp)(http) NARROWPEAK
GSM945310_hg19_wgEncodeUwHistoneHcfaaH3k4me3StdRawRep1.bigWig 62.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap