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Sample GSM945297 Query DataSets for GSM945297
Status Public on Jun 07, 2012
Title UW_ChipSeq_K562_H3K4me3_ZNF_knockout_2C10_C5
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: ZNF_knockout_2C10_C5
treatment description: beta-globin LCR deletion (18Kb), homozygous (Stam)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000471
labexpid: DS16263
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol ZNF_knockout_2C10_C5
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190080
BioSample SAMN01731559
Named Annotation GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5RawRep1.bigWig
Named Annotation GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5HotspotsRep1.broadPeak.gz 891.3 Kb (ftp)(http) BROADPEAK
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5HotspotsRep2.broadPeak.gz 2.1 Mb (ftp)(http) BROADPEAK
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5PkRep1.narrowPeak.gz 851.9 Kb (ftp)(http) NARROWPEAK
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5PkRep2.narrowPeak.gz 800.4 Kb (ftp)(http) NARROWPEAK
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5RawRep1.bigWig 82.3 Mb (ftp)(http) BIGWIG
GSM945297_hg19_wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5RawRep2.bigWig 130.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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