NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM945292 Query DataSets for GSM945292
Status Public on Jun 07, 2012
Title UW_ChipSeq_HPAF_H3K4me3
Sample type SRA
 
Source name HPAF
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HPAF
cell organism: human
cell description: pulmonary artery fibroblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000958
labexpid: DS16153
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ScienCell
Treatment protocol None
Growth protocol HPAF_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX190075
BioSample SAMN01731554
Named Annotation GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdRawRep1.bigWig
Named Annotation GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep1.broadPeak.gz 721.0 Kb (ftp)(http) BROADPEAK
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdHotspotsRep2.broadPeak.gz 758.4 Kb (ftp)(http) BROADPEAK
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdPkRep1.narrowPeak.gz 653.9 Kb (ftp)(http) NARROWPEAK
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdPkRep2.narrowPeak.gz 647.8 Kb (ftp)(http) NARROWPEAK
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdRawRep1.bigWig 67.8 Mb (ftp)(http) BIGWIG
GSM945292_hg19_wgEncodeUwHistoneHpafH3k4me3StdRawRep2.bigWig 77.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap