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Sample GSM945279 Query DataSets for GSM945279
Status Public on Jun 07, 2012
Title UW_ChipSeq_K562_H3K4me3_ZNF_knockout_P5
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: ZNF_knockout_P5
treatment description: Parental K562 (Stam)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000471
labexpid: DS17490
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol ZNF_knockout_P5
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX190062
BioSample SAMN01731541
Named Annotation GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5RawRep1.bigWig
Named Annotation GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5HotspotsRep1.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5HotspotsRep2.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5PkRep1.narrowPeak.gz 837.9 Kb (ftp)(http) NARROWPEAK
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5PkRep2.narrowPeak.gz 842.4 Kb (ftp)(http) NARROWPEAK
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5RawRep1.bigWig 73.4 Mb (ftp)(http) BIGWIG
GSM945279_hg19_wgEncodeUwHistoneK562H3k04me3StdZnfp5RawRep2.bigWig 79.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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